Information about most Sacharomyces cerevisiae genes, whether newly discovered or previously identified, is very limited. We propose to utilize a new multipurpose transposon to construct a lacZ expression reporter for every gene in the yeast genome and an epitope-tagged version of every protein. Strains carrying lacZ reporters will he used to determine which genes are expressed during vegetative growth, sporulation and mating. Strains containing epitope-tagged proteins will be used to localize gene products by indirect immunofluorescence using antibodies directed against the epitope. Proteins that localize to the nucleus will be examined for localization to chromosomes through the analysis of spread preparations of meiotic nuclei. We will analyze strains containing insertion mutations in small ORFs, sporulation-induced genes and pheromone-regulated genes for defects in vegetative growth, sporulation and mating, respectively. Finally, a subset of epitope-tag insertions in essential genes will be analyzed for conditional growth defects. We expect this project to have significant impact on the scientific community. The information generated will be maintained in a data base accessible by Internet. Any researcher who identifies a yeast gene will be able to determine immediately whether that gene is expressed at a specific time during the life cycle and whether its gene product localizes to a specific subcellular location. Insertion libraries, plasmids, and yeast strains containing lacZ-reporter genes and epitope-tagged proteins will he made available to all interested researchers. These reagents are expected to be useful in many different types of studies. The technology proposed and the information gained will be applicable to the study of other organisms.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA077808-03
Application #
2896473
Study Section
Special Emphasis Panel (ZHG1-HGR-N (J1))
Program Officer
Mietz, Judy
Project Start
1997-09-01
Project End
2000-07-31
Budget Start
1999-08-01
Budget End
2000-07-31
Support Year
3
Fiscal Year
1999
Total Cost
Indirect Cost
Name
Yale University
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
082359691
City
New Haven
State
CT
Country
United States
Zip Code
06520
Gallagher, Jennifer E G; Zheng, Wei; Rong, Xiaoqing et al. (2014) Divergence in a master variator generates distinct phenotypes and transcriptional responses. Genes Dev 28:409-21
Waern, Karl; Snyder, Michael (2013) Extensive transcript diversity and novel upstream open reading frame regulation in yeast. G3 (Bethesda) 3:343-52
Zheng, Wei; Zhao, Hongyu; Mancera, Eugenio et al. (2010) Genetic analysis of variation in transcription factor binding in yeast. Nature 464:1187-91
Kasowski, Maya; Grubert, Fabian; Heffelfinger, Christopher et al. (2010) Variation in transcription factor binding among humans. Science 328:232-5
Snyder, Michael; Gallagher, Jennifer E G (2009) Systems biology from a yeast omics perspective. FEBS Lett 583:3895-9
Wang, Zhong; Gerstein, Mark; Snyder, Michael (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10:57-63
Nagalakshmi, Ugrappa; Wang, Zhong; Waern, Karl et al. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320:1344-9
Hall, David A; Ptacek, Jason; Snyder, Michael (2007) Protein microarray technology. Mech Ageing Dev 128:161-7
Srikantha, Thyagarajan; Borneman, Anthony R; Daniels, Karla J et al. (2006) TOS9 regulates white-opaque switching in Candida albicans. Eukaryot Cell 5:1674-87
Seringhaus, Michael; Kumar, Anuj; Hartigan, John et al. (2006) Genomic analysis of insertion behavior and target specificity of mini-Tn7 and Tn3 transposons in Saccharomyces cerevisiae. Nucleic Acids Res 34:e57

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