We continue work from our previous proposal in developing new Bayesian methodology for longitudinal cancer data with missingness. In the presence of missing data that is related to observed or unobserved responses, it is known that mis-specifying the dependence will most often result in biased estimates of mean parameters. In addition, in such settings, flexible, parsimonious dependence models are often necessary. Such models are not currently available for correlation matrices (which form an integral part of many longitudinal models).
The first aim of this proposal will introduce a new parameterization for a correlation matrix for longitudinal responses that offers considerable benefits with respect to prior specification and modeling. We will explore several models and priors and their associated properties, computational issues and strategies both with respect to automated parsimonious modeling, posterior sampling, and high-dimensional problems, and their implementation in a wide array of longitudinal models with applications.
The second aim will explore the extension of these models to multivariate longitudinal data. In particular, we will explore the 'ordering'of the multivariate longitudinal response vector with regards to parsimonious models and prior specification and correlation/covariance structures for which this ordering is not an issue. In the third aim, we will develop new Bayesian approaches for causal inference in longitudinal cancer studies in which repeatedly measured outcomes may be informatively missing due to loss to follow-up or protocol-defined events (progression or death). In seeking to draw inference about causal estimands, non-identifiable assumptions are required. We will introduce low-dimensional, interpretable parameterizations of these assumptions and elicit priors for these parameters from scientific experts. These methods will be used to answer questions of interest from several recent cancer clinical trials including assessing potential surrogate markers (Specific Aim 1), exploring the relationship between patient reported (quality of life) and physician reported (toxicity) outcomes (Specific Aim 2), and making inference at the end of quality of life studies when subjects have dropped out due to cancer progression or death (Specific Aim 3).

Public Health Relevance

The new methods proposed in this application will have important public health benefits. They will facilitate drawing correct inferences from quality of life studies for late stage cancers, understanding the relationship between physician reported and patient reported outcomes, and making earlier determinations of treatment effects.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project (R01)
Project #
5R01CA085295-12
Application #
8267018
Study Section
Biostatistical Methods and Research Design Study Section (BMRD)
Program Officer
Dunn, Michelle C
Project Start
2000-05-01
Project End
2012-08-17
Budget Start
2012-06-01
Budget End
2012-08-17
Support Year
12
Fiscal Year
2012
Total Cost
$24,935
Indirect Cost
$3,762
Name
University of Florida
Department
Public Health & Prev Medicine
Type
Schools of Public Health
DUNS #
969663814
City
Gainesville
State
FL
Country
United States
Zip Code
32611
Kim, Chanmin; Daniels, Michael J; Marcus, Bess H et al. (2016) A framework for Bayesian nonparametric inference for causal effects of mediation. Biometrics :
Josefsson, Maria; de Luna, Xavier; Daniels, Michael J et al. (2016) Causal inference with longitudinal outcomes and non-ignorable drop-out: Estimating the effect of living alone on cognitive decline. J R Stat Soc Ser C Appl Stat 65:131-144
Liu, Minzhao; Daniels, Michael J; Perri, Michael G (2016) Quantile regression in the presence of monotone missingness with sensitivity analysis. Biostatistics 17:108-21
Xu, Dandan; Chatterjee, Arkendu; Daniels, Michael (2016) A note on posterior predictive checks to assess model fit for incomplete data. Stat Med 35:5029-5039
Gaskins, J T; Daniels, M J (2016) Covariance Partition Priors: A Bayesian Approach to Simultaneous Covariance Estimation for Longitudinal Data. J Comput Graph Stat 25:167-186
Su, Li; Daniels, Michael J (2015) Bayesian modeling of the covariance structure for irregular longitudinal data using the partial autocorrelation function. Stat Med 34:2004-18
Linero, Antonio R; Daniels, Michael J (2015) A Flexible Bayesian Approach to Monotone Missing Data in Longitudinal Studies with Nonignorable Missingness with Application to an Acute Schizophrenia Clinical Trial. J Am Stat Assoc 110:45-55
Daniels, Michael J; Jackson, Dan; Feng, Wei et al. (2015) Pattern mixture models for the analysis of repeated attempt designs. Biometrics 71:1160-7
Daniels, M J; Wang, C; Marcus, B H (2014) Fully Bayesian inference under ignorable missingness in the presence of auxiliary covariates. Biometrics 70:62-72
Gaskins, J T; Daniels, M J; Marcus, B H (2014) Sparsity Inducing Prior Distributions for Correlation Matrices of Longitudinal Data. J Comput Graph Stat 23:966-984

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