The objective is to understand the regulation of a eukaryotic gene in terms of nucleic acid-protein interaction and metabolic regulation of effector molecules.
The specific aims are to characterize the DNA sequences required for regulated expression and to identify and characterize the proteins which interact with these sequences. Specific nucleotide changes in the twenty-two base pair dyad (the upstream activation site, or UAS) which mediates regulation of the alcohol dehydrogenase 2 gene of yeast will be constructed and characterized to identify potential points of contact between the DNA and ADR1, the protein which apparently interacts at the UAS. The domains of ADR1 mediating nuclear entry, DNA binding, transcriptional activation, and regulation will be identified by analysis of deletion mutants. The putative DNA binding and transcription activation domain of ADR1 will be analyzed by classical and recombinant genetics (using oligonucleotide directed mutagenesis) and by constructing hybrid regulatory genes. Characterization of a putative TATA or CAP regulator factor encoded by ADR6 will be achieved by genetic and biochemical means. A better understanding of alcohol metabolism and the genes controlling ethanol synthesis and degradation are anticipated medical benefits of these studies. A basic understanding of how proteins control gene action will ultimately be of medical benefit as well.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM026079-13
Application #
3273544
Study Section
Genetics Study Section (GEN)
Project Start
1978-12-01
Project End
1991-11-30
Budget Start
1990-12-01
Budget End
1991-11-30
Support Year
13
Fiscal Year
1991
Total Cost
Indirect Cost
Name
University of Washington
Department
Type
Schools of Medicine
DUNS #
135646524
City
Seattle
State
WA
Country
United States
Zip Code
98195
Braun, Katherine A; Dombek, Kenneth M; Young, Elton T (2016) Snf1-Dependent Transcription Confers Glucose-Induced Decay upon the mRNA Product. Mol Cell Biol 36:628-44
Braun, Katherine A; Vaga, Stefania; Dombek, Kenneth M et al. (2014) Phosphoproteomic analysis identifies proteins involved in transcription-coupled mRNA decay as targets of Snf1 signaling. Sci Signal 7:ra64
Braun, Katherine A; Young, Elton T (2014) Coupling mRNA synthesis and decay. Mol Cell Biol 34:4078-87
Parua, Pabitra K; Young, Elton T (2014) Binding and transcriptional regulation by 14-3-3 (Bmh) proteins requires residues outside of the canonical motif. Eukaryot Cell 13:21-30
Parua, Pabitra K; Dombek, Kenneth M; Young, Elton T (2014) Yeast 14-3-3 protein functions as a comodulator of transcription by inhibiting coactivator functions. J Biol Chem 289:35542-60
Braun, Katherine A; Parua, Pabitra K; Dombek, Kenneth M et al. (2013) 14-3-3 (Bmh) proteins regulate combinatorial transcription following RNA polymerase II recruitment by binding at Adr1-dependent promoters in Saccharomyces cerevisiae. Mol Cell Biol 33:712-24
Infante, Juan Jose; Law, G Lynn; Young, Elton T (2012) Analysis of nucleosome positioning using a nucleosome-scanning assay. Methods Mol Biol 833:63-87
Young, Elton T; Zhang, Chao; Shokat, Kevan M et al. (2012) The AMP-activated protein kinase Snf1 regulates transcription factor binding, RNA polymerase II activity, and mRNA stability of glucose-repressed genes in Saccharomyces cerevisiae. J Biol Chem 287:29021-34
Abate, Georgia; Bastonini, Emanuela; Braun, Katherine A et al. (2012) Snf1/AMPK regulates Gcn5 occupancy, H3 acetylation and chromatin remodelling at S. cerevisiae ADY2 promoter. Biochim Biophys Acta 1819:419-27
Parua, Pabitra K; Ryan, Paul M; Trang, Kayla et al. (2012) Pichia pastoris 14-3-3 regulates transcriptional activity of the methanol inducible transcription factor Mxr1 by direct interaction. Mol Microbiol 85:282-98

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