This long running project has been focused on nucleoprotein complexes active in DNA recombination and replication. The main tools that we have been using are electron microscopy and computational image analysis. Over the course of this project new and innovative methods have been developed that greatly increase our ability to understand the structure and function of many different helical polymers. What emerges in our studies of proteins like bacterial RecA and human Rad51 is that the polymers they form are highly dynamic, and that these polymers cannot be reduced to a single structure. Rather, the multiplicity of states that can exist needs to be understood. The relevance of these studies to disease has been greatly elevated by the understanding that proteins such as the product of the breast cancer susceptibility gene BRCA2 interact with Rad51 and target Rad51 to sites of DNA damage. In the proposed extension of this grant there are four aims: I) continued studies of complexes between RecA/Rad51 and the proteins that regulate these filaments, such as DinI, BRCA2, Hed1 and RAD51AP1. A focus will be on how the C-terminal domain of RecA and the N-terminal domain of Rad51 are regulatory, and how regulatory proteins that modulate the properties of these filaments interact with these regulatory domains. II) Determination of the structure of the filaments formed by viral single-stranded DNA binding proteins. The initial focus will be on Herpes Simplex Type 1 Virus (HSV-1) ICP8, but will then be extended to related viral proteins, such as from Epstein Barr Virus and Kaposi Sarcoma Herpes Virus. III) Structural studies of F-pili, needed for bacterial conjugation, and filamentous bacteriophage. It has long been suspected that the two are structural homologs, but structural studies of these filaments have been very difficult. We now have the tools in place to determine fairly high resolution structures for both. F-pili are involved in the transfer of antibiotic resistance within a bacterial population, so the public health relevance is great. IV) Capsid proteins that form spherical viral shells can be mutated or modified so that they form helical tubes instead. These tubes contain a conformation of the protein that fails to switch properly, and are thus of great interest in understanding virus assembly. The proposed focus is on capsid proteins from bacteriophage P22, Infectious Bursal Disease Virus, and Murine Leukemia virus.

Public Health Relevance

This project is aimed at understanding structure/function relationships in large complexes of proteins with DNA. Some of these proteins are active in genetic recombination, and defects in these recombination pathways can lead to cancer. Other complexes are involved in the transfer of antibiotic resistance within populations of bacteria, an area of growing concern for public health. And other complexes are involved in the assembly of viruses, including one that causes leukemia.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM035269-27
Application #
8215708
Study Section
Macromolecular Structure and Function C Study Section (MSFC)
Program Officer
Flicker, Paula F
Project Start
1986-04-01
Project End
2014-02-28
Budget Start
2012-03-01
Budget End
2014-02-28
Support Year
27
Fiscal Year
2012
Total Cost
$334,438
Indirect Cost
$113,687
Name
University of Virginia
Department
Biochemistry
Type
Schools of Medicine
DUNS #
065391526
City
Charlottesville
State
VA
Country
United States
Zip Code
22904
Patel, Gayatri; Johnson, Daniel S; Sun, Bo et al. (2011) A257T linker region mutant of T7 helicase-primase protein is defective in DNA loading and rescued by T7 DNA polymerase. J Biol Chem 286:20490-9
Gajewski, Stefan; Webb, Michael R; Galkin, Vitold et al. (2011) Crystal structure of the phage T4 recombinase UvsX and its functional interaction with the T4 SF2 helicase UvsW. J Mol Biol 405:65-76
Galkin, Vitold E; Britt, Rachel L; Bane, Lukas B et al. (2011) Two modes of binding of DinI to RecA filament provide a new insight into the regulation of SOS response by DinI protein. J Mol Biol 408:815-24
Hui, Monica P; Galkin, Vitold E; Yu, Xiong et al. (2010) ParA2, a Vibrio cholerae chromosome partitioning protein, forms left-handed helical filaments on DNA. Proc Natl Acad Sci U S A 107:4590-5
Yu, Xiong; Egelman, Edward H (2010) Helical filaments of human Dmc1 protein on single-stranded DNA: a cautionary tale. J Mol Biol 401:544-51
Lucarelli, Debora; Wang, Ying A; Galkin, Vitold E et al. (2009) The RecB nuclease domain binds to RecA-DNA filaments: implications for filament loading. J Mol Biol 391:269-74
Makhov, Alexander M; Sen, Anindito; Yu, Xiong et al. (2009) The bipolar filaments formed by herpes simplex virus type 1 SSB/recombination protein (ICP8) suggest a mechanism for DNA annealing. J Mol Biol 386:273-9
Wang, Ying A; Yu, Xiong; Silverman, Philip M et al. (2009) The structure of F-pili. J Mol Biol 385:22-9
Galkin, Vitold E; Yu, Xiong; Bielnicki, Jakub et al. (2009) Cleavage of bacteriophage lambda cI repressor involves the RecA C-terminal domain. J Mol Biol 385:779-87
Zhang, Xiao-Ping; Galkin, Vitold E; Yu, Xiong et al. (2009) Loop 2 in Saccharomyces cerevisiae Rad51 protein regulates filament formation and ATPase activity. Nucleic Acids Res 37:158-71

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