This project is concerned with the long-term constraints on the rate of phenotypic evolution, particularly with the interaction of mutation and random genetic drift. Recent theoretical work has clarified the important contribution that polygenic mutation makes to the divergence of inbred lines, the response to long-term directional selection programs, and the maintenance of genetic variation under stabilizing selection. However, the practical utility of this theory is severely limited by a lack of rigorous. information on the properties of polygenic mutation. Using three model systems (the microcrustacean Daphnia, the snail Lymnaea, and corn), we plan to initiate long-term mutation-accumulation experiments in order to: 1) obtain estimates for the mutational rate of input of genetic variance (VM) and extent of dominance and pleiotropic effects of new mutations, and 2) test the hypotheses that the rate of polygenic mutation depends on generation time, frequency of meiosis, age of expression of characters, and genetic background. The proposed species and experimental protocols have been specifically selected in order to avoid the problems that have marred previous attempts to measure the properties of polygenic mutation and to help reveal whether existing estimates of VM are biased. In conjunction with the empirical work, analytical and numerical studies will be performed in order to develop quantitative genetic models that incorporate the joint interaction of finite population size, polygenic mutation, and selection. The sensitivity of the theoretical predictions to dominance, linkage, and pleiotropy will be evaluated. The long-term practical goals of the study are to provide the quantitative information necessary to: 1) predict the expected stability of asexual and homozygous lines that are becoming increasingly utilized in biomedical research, 2) determine the optimal designs of long-term selection programs and genetic conservation programs.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
7R01GM036827-02
Application #
3291379
Study Section
Genetics Study Section (GEN)
Project Start
1989-08-01
Project End
1993-07-31
Budget Start
1989-08-01
Budget End
1990-07-31
Support Year
2
Fiscal Year
1989
Total Cost
Indirect Cost
Name
University of Oregon
Department
Type
Schools of Arts and Sciences
DUNS #
948117312
City
Eugene
State
OR
Country
United States
Zip Code
97403
Long, Hongan; Sung, Way; Kucukyildirim, Sibel et al. (2018) Evolutionary determinants of genome-wide nucleotide composition. Nat Ecol Evol 2:237-240
Lynch, Michael (2018) Phylogenetic divergence of cell biological features. Elife 7:
Senra, Marcus V X; Sung, Way; Ackerman, Matthew et al. (2018) An Unbiased Genome-Wide View of the Mutation Rate and Spectrum of the Endosymbiotic Bacterium Teredinibacter turnerae. Genome Biol Evol 10:723-730
Long, Hongan; Doak, Thomas G; Lynch, Michael (2018) Limited Mutation-Rate Variation Within the Paramecium aurelia Species Complex. G3 (Bethesda) 8:2523-2526
Long, Hongan; Miller, Samuel F; Williams, Emily et al. (2018) Specificity of the DNA Mismatch Repair System (MMR) and Mutagenesis Bias in Bacteria. Mol Biol Evol 35:2414-2421
Maruki, Takahiro; Lynch, Michael (2017) Genotype Calling from Population-Genomic Sequencing Data. G3 (Bethesda) 7:1393-1404
Dillon, Marcus M; Sung, Way; Sebra, Robert et al. (2017) Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations in Vibrio cholerae and Vibrio fischeri. Mol Biol Evol 34:93-109
Gout, Jean-Francois; Li, Weiyi; Fritsch, Clark et al. (2017) The landscape of transcription errors in eukaryotic cells. Sci Adv 3:e1701484
Tincher, Clayton; Long, Hongan; Behringer, Megan et al. (2017) The Glyphosate-Based Herbicide Roundup Does not Elevate Genome-Wide Mutagenesis of Escherichia coli. G3 (Bethesda) 7:3331-3335
Sun, Ying; Powell, Kate E; Sung, Way et al. (2017) Spontaneous mutations of a model heterotrophic marine bacterium. ISME J 11:1713-1718

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