The broad objective of this project is to understand both the biochemical mechanism and biological function of DNA helicases. One of the helicases that is a focus of this proposal is distinctive in that it recognizes a specific single-stranded DN sequence while translocating and, in response to that interaction, alters its biochemical behavior in unprecedented ways. The other helicases comprise a broad family of related orthologs and paralogs, the RecQ-family. The RecQ helicases interact specifically with numerous accessory proteins that take advantage of their unique unwinding capacities and that also alter their DNA unwinding capabilities. Finally, a third group of helicases constitutes a heterogeneous collection of helicases that share the common capacity to remodel protein-ssDNA complexes. Understanding the mechanism and function of such motor proteins are goals of this research proposal. In the past decade, it has become possible to reliably examine helicases and DNA motor proteins at the single-molecule level. This capability has transformed mechanistic analysis of this important family of proteins. Single-molecules of these helicases will be imaged to literally visualize the manner by which they bind and release their partner proteins in order to better understand their functions in important biological regulatory processes. We will use both single-molecule and ensemble methods to understand both mechanism and function.

Public Health Relevance

The broad objective of this proposal is to understand both the biochemical mechanism and biological function of DNA helicases. These proteins are involved in various aspects of DNA repair and chromosome maintenance. A major consequence of unrepaired DNA damage is genomic rearrangement that enables tumorigenesis. These proteins are responsible for preserving genetic integrity in all organisms and, when defective in humans, they are responsible for a variety of diseases. Mutations in genes that encode helicases are associated with human pathologies, such as breast cancer and Fanconi's anemia (FANCJ/FANCM); xeroderma pigmentosum (ERCC2 and ERCC3); Cockayne's (ERCC6); Bloom's (BLM); Werner's (WRN); and Rothmund-Thomson (RECQ4) syndromes, revealing connections to disease processes as diverse as cancer, anemia, and premature aging. Consequently, a molecular understanding of these proteins and their analogs is important to human health.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM041347-27
Application #
9113253
Study Section
Molecular Genetics A Study Section (MGA)
Program Officer
Barski, Oleg
Project Start
1988-12-01
Project End
2020-05-31
Budget Start
2016-07-01
Budget End
2017-05-31
Support Year
27
Fiscal Year
2016
Total Cost
Indirect Cost
Name
University of California Davis
Department
Microbiology/Immun/Virology
Type
Schools of Medicine
DUNS #
047120084
City
Davis
State
CA
Country
United States
Zip Code
95618
Bell, Jason C; Kowalczykowski, Stephen C (2016) RecA: Regulation and Mechanism of a Molecular Search Engine. Trends Biochem Sci 41:491-507
Pavankumar, T L; Exell, J C; Kowalczykowski, S C (2016) Direct Fluorescent Imaging of Translocation and Unwinding by Individual DNA Helicases. Methods Enzymol 581:1-32
Kowalczykowski, Stephen C (2015) An Overview of the Molecular Mechanisms of Recombinational DNA Repair. Cold Spring Harb Perspect Biol 7:
Fasching, Clare L; Cejka, Petr; Kowalczykowski, Stephen C et al. (2015) Top3-Rmi1 dissolve Rad51-mediated D loops by a topoisomerase-based mechanism. Mol Cell 57:595-606
Bocquet, Nicolas; Bizard, Anna H; Abdulrahman, Wassim et al. (2014) Structural and mechanistic insight into Holliday-junction dissolution by topoisomerase III? and RMI1. Nat Struct Mol Biol 21:261-8
Paeschke, Katrin; Bochman, Matthew L; Garcia, P Daniela et al. (2013) Pif1 family helicases suppress genome instability at G-quadruplex motifs. Nature 497:458-62
Liu, Bian; Baskin, Ronald J; Kowalczykowski, Stephen C (2013) DNA unwinding heterogeneity by RecBCD results from static molecules able to equilibrate. Nature 500:482-5
Handa, Naofumi; Yang, Liang; Dillingham, Mark S et al. (2012) Molecular determinants responsible for recognition of the single-stranded DNA regulatory sequence, ?, by RecBCD enzyme. Proc Natl Acad Sci U S A 109:8901-6
Cejka, Petr; Plank, Jody L; Dombrowski, Christopher C et al. (2012) Decatenation of DNA by the S. cerevisiae Sgs1-Top3-Rmi1 and RPA complex: a mechanism for disentangling chromosomes. Mol Cell 47:886-96
Rad, Behzad; Kowalczykowski, Stephen C (2012) Efficient coupling of ATP hydrolysis to translocation by RecQ helicase. Proc Natl Acad Sci U S A 109:1443-8

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