Our long term goal is to understand early vertebrate development at the molecular level. We study the problem in the frog Xenopus, whose abundant eggs are large and readily manipulated by microinjection and microsurgery. The eggs are large enough to produce material for biochemical analysis, and importantly for this project, ample RNA from manipulated embryos for deep sequencing. A combination of experimental embryology and molecular manipulation provides approaches to the roles of specific signaling pathways, transcriptional and post- transcriptional regulation in elaborating the structure of the embryo. Most of the paradigms for development of vertebrate embryos have come first from work with amphibians, and many of the signaling pathways were first analyzed using amphibian embryos. Gain of function experiments using mRNA injection, and loss of function using morpholino oligonucleotides have provided insights into the mechanisms that underlie tissue differentiation and morphogenesis. During previous grant periods, we have used expression cloning to identify potent signaling and signal transduction activities that contribute to embryoni development. In screens for embryonic activities that alter neural patterning we identified several RNA regulators that show specific effects in both gain of function and loss of function experiments. We have established methods to study both splicing regulation and changes in gene expression using deep sequencing.
In aim 1 of the next grant period, we will continue analysis of selected RNA binding and pre-mRNA splice regulators that are deployed during the induction and patterning of the neural plate, and will continue to gain new insight into the selective effect of these proteins on specific splicing choices. In addition to splicing regulation we will also study transcription factors, and chromatin regulators whose expression are altered during neural patterning, and will particularly investigate factors that are turned on by the Wnt pathway during posterior patterning of the neural plate.

Public Health Relevance

Human diseases are frequently associated with aberrant function of genes normally used in early development. Here we will understand the function of gene products that act in patterning of the nervous system, including transcriptional regulators, and proteins that process pre- mRNAs.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM042341-27A1
Application #
8579675
Study Section
Development - 1 Study Section (DEV1)
Program Officer
Hoodbhoy, Tanya
Project Start
1988-09-01
Project End
2017-05-31
Budget Start
2013-08-01
Budget End
2014-05-31
Support Year
27
Fiscal Year
2013
Total Cost
$356,435
Indirect Cost
$117,910
Name
University of California Berkeley
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
124726725
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Plouhinec, Jean-Louis; Roche, Daniel D; Pegoraro, Caterina et al. (2014) Pax3 and Zic1 trigger the early neural crest gene regulatory network by the direct activation of multiple key neural crest specifiers. Dev Biol 386:461-72
Chung, Hyeyoung A; Medina-Ruiz, Sofia; Harland, Richard M (2014) Sp8 regulates inner ear development. Proc Natl Acad Sci U S A 111:6329-34
Young, John J; Kjolby, Rachel A S; Kong, Nikki R et al. (2014) Spalt-like 4 promotes posterior neural fates via repression of pou5f3 family members in Xenopus. Development 141:1683-93
Song, Rui; Walentek, Peter; Sponer, Nicole et al. (2014) miR-34/449 miRNAs are required for motile ciliogenesis by repressing cp110. Nature 510:115-20
Peyrot, Sara M; Wallingford, John B; Harland, Richard M (2011) A revised model of Xenopus dorsal midline development: differential and separable requirements for Notch and Shh signaling. Dev Biol 352:254-66
Dichmann, Darwin S; Harland, Richard M (2011) Nkx6 genes pattern the frog neural plate and Nkx6.1 is necessary for motoneuron axon projection. Dev Biol 349:378-86
Harland, Richard M; Grainger, Robert M (2011) Xenopus research: metamorphosed by genetics and genomics. Trends Genet 27:507-15
Peyrot, Sara M; Martin, Benjamin L; Harland, Richard M (2010) Lymph heart musculature is under distinct developmental control from lymphatic endothelium. Dev Biol 339:429-38
Lee, Jen-Yi; Harland, Richard M (2010) Endocytosis is required for efficient apical constriction during Xenopus gastrulation. Curr Biol 20:253-8
Maczkowiak, Frederique; Mateos, Stephanie; Wang, Estee et al. (2010) The Pax3 and Pax7 paralogs cooperate in neural and neural crest patterning using distinct molecular mechanisms, in Xenopus laevis embryos. Dev Biol 340:381-96

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