The kappaE3' enhancer is a strong, B cell specific enhancer that lies 8.5 kilobases downstream of the immunoglobulin kappa constant region exon. The activity of this enhancer is controlled during B cell development. That is, it is silent at the pre-B cell stage, but active at the B cell and plasma cell stages. Our goals are to identify and characterize the DNA sequences and trans-acting factors that are responsible for the developmental control of kappaE3' enhancer activity. We will functionally characterize 3 proteins (PU.1, NF-EM5, and NF-E1) that bind to kappaE3' enhancer sequences. PU.1 is an ets-related transcription factor that binds to the kappaE3' enhancer and recruits the binding of a second B cell-specific factor NF-EM5. Binding of both factors appears to be important for kappaE3' enhancer activity. We will characterize the interaction between PU.1 and NF-EM5 by several approaches. First, we will prepare specific mutations in the PU.1 sequence and determine the ability of the mutant proteins to interact with NF-EM5. Second, we will determine whether the phosphorylation status of PU.1 is controlled during B cell development. The protein-protein interaction between these proteins requires phosphorylation of PU.1 and this may provide a mechanism for the developmental control of enhancer activity. Finally, we will characterize candidate NF-EM5 cDNA clones that encode proteins that physically interact with PU.1. The third protein that we will characterize, NF-E1, binds to a negative-acting region of the kappaE3' enhancer. This factor can either repress or activate transcription depending upon promoter context or cellular concentration. This dual function of NF-E1 may relate to the developmental control of kappaE3' enhancer activity. We will prepare mutations in the NF-E1 sequence to identify the domains responsible for transcriptional activation and repression. We will then perform experiments designed to detect proteins that interact with NF-E1 and control its activity. Ultimately, understanding the developmental control of kappaE3' enhancer activity requires understanding the function of each enhancer motif. We have determined that the kappaE3' enhancer is composed of both positive- as well as negative-acting DNA sequences. We will determine the role of each positive-acting enhancer motif at each stage of B cell development by preparing site-specific mutations in each motif. Constructs will be assayed for enhancer activity after transfection into cell lines representative of each stage of B cell development. We will also study the mechanism of action of the negative-acting sequences that are responsible for silencer activity at the pre-B cell stage. We will determine whether these DNA sequences can repress heterologous transcriptional control elements and whether their function is B cell specific. We will also attempt to identify the specific targets of silencer activity. The above experiments will enable us to determine the relative importance of each enhancer motif at each stage of B cell development. Our long-term goals are to determine whether the factors that control kappaE3' enhancer activity also play a role in B cell differentiation.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM042415-05
Application #
2181356
Study Section
Molecular Biology Study Section (MBY)
Project Start
1989-07-01
Project End
1997-03-31
Budget Start
1994-04-01
Budget End
1995-03-31
Support Year
5
Fiscal Year
1994
Total Cost
Indirect Cost
Name
University of Pennsylvania
Department
Veterinary Sciences
Type
Schools of Veterinary Medicine
DUNS #
042250712
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Atchison, Michael L (2014) Function of YY1 in Long-Distance DNA Interactions. Front Immunol 5:45
Hodawadekar, Suchita; Yu, Duonan; Cozma, Diana et al. (2007) B-Lymphoma cells with epigenetic silencing of Pax5 trans-differentiate into macrophages, but not other hematopoietic lineages. Exp Cell Res 313:331-40
Hodawadekar, Suchita; Wei, Fang; Yu, Duonan et al. (2006) Epigenetic histone modifications do not control Igkappa locus contraction and intranuclear localization in cells with dual B cell-macrophage potential. J Immunol 177:6165-71
Wilkinson, Frank H; Park, Kyoungsook; Atchison, Michael L (2006) Polycomb recruitment to DNA in vivo by the YY1 REPO domain. Proc Natl Acad Sci U S A 103:19296-301
McDevit, Daniel C; Perkins, Leslie; Atchison, Michael L et al. (2005) The Ig kappa 3' enhancer is activated by gradients of chromatin accessibility and protein association. J Immunol 174:2834-42
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Bai, Yuchen; Srinivasan, Lakshmi; Perkins, Leslie et al. (2005) Protein acetylation regulates both PU.1 transactivation and Ig kappa 3' enhancer activity. J Immunol 175:5160-9
Joo, Myungsoo; Park, Gye Young; Wright, Jeffrey G et al. (2004) Transcriptional regulation of the cyclooxygenase-2 gene in macrophages by PU.1. J Biol Chem 279:6658-65
Srinivasan, Lakshmi; Atchison, Michael L (2004) YY1 DNA binding and PcG recruitment requires CtBP. Genes Dev 18:2596-601
Nagulapalli, Sujatha; Goheer, Aisha; Pitt, Leslie et al. (2002) Mechanism of e47-Pip interaction on DNA resulting in transcriptional synergy and activation of immunoglobulin germ line sterile transcripts. Mol Cell Biol 22:7337-50

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