This proposal is designed to examine molecular mechanisms underlying the assembly and function of Kv1.3, a voltage-gated potassium channel (Kv) important in the physiology of T- lymphocytes. Kv1.3 is a typical member of Kv channels, which have diverse and critical roles in both excitable and non-excitable cells. The proposed experiments will employ a wide range of techniques, including biochemical and electrophysiological assays in heterologous expression systems (Xenopus oocytes, mammalian cells, and microsomal membranes).
The first aim i s to elucidate interaction surfaces, both within and between subunits, during the assembly of Kv changes into functional homotetramers. We hypothesize that conformational changes in oligomeric intermediates are generated along the assembly pathway, and that some are prerequisites for subsequent assembly steps. We will use association and cysteine accessibility assays and dominant negative suppression to explore channel topology and to test specific candidate sites of interaction. Substituted cysteine accessibility will be assayed in part by mass-tagging using a cysteine reagent conjugated with polyethylene glycol.
The second aim i s to study the functional role played by charged amino acids that are believed to play a role in both assembly and channel gating. We will explore voltage-dependent conformational changes of the S2, S3, and S4 transmembrane segments, using cysteine scanning methods in patch clamp recording. We will test the hypothesis that negatively charged residues in the S2 and S3 segments affect the voltage-dependent conformations of the S4 segment.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM052302-05
Application #
2850552
Study Section
Special Emphasis Panel (ZRG1-MDCN-3 (01))
Project Start
1995-05-01
Project End
2003-04-30
Budget Start
1999-05-01
Budget End
2000-04-30
Support Year
5
Fiscal Year
1999
Total Cost
Indirect Cost
Name
University of Pennsylvania
Department
Physiology
Type
Schools of Medicine
DUNS #
042250712
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Fritch, Benjamin; Kosolapov, Andrey; Hudson, Phillip et al. (2018) Origins of the Mechanochemical Coupling of Peptide Bond Formation to Protein Synthesis. J Am Chem Soc 140:5077-5087
Tu, LiWei; Deutsch, Carol (2017) Determinants of Helix Formation for a Kv1.3 Transmembrane Segment inside the Ribosome Exit Tunnel. J Mol Biol 429:1722-1732
Po, Pengse; Delaney, Erin; Gamper, Howard et al. (2017) Effect of Nascent Peptide Steric Bulk on Elongation Kinetics in the Ribosome Exit Tunnel. J Mol Biol 429:1873-1888
Lu, Jianli; Deutsch, Carol (2014) Regional discrimination and propagation of local rearrangements along the ribosomal exit tunnel. J Mol Biol 426:4061-4073
Delaney, Erin; Khanna, Pooja; Tu, LiWei et al. (2014) Determinants of pore folding in potassium channel biogenesis. Proc Natl Acad Sci U S A 111:4620-5
Tu, Liwei; Khanna, Pooja; Deutsch, Carol (2014) Transmembrane segments form tertiary hairpins in the folding vestibule of the ribosome. J Mol Biol 426:185-98
Wu, Cheng; Wei, Jiajie; Lin, Pen-Jen et al. (2012) Arginine changes the conformation of the arginine attenuator peptide relative to the ribosome tunnel. J Mol Biol 416:518-33
Gajewski, Christine; Dagcan, Alper; Roux, Benoit et al. (2011) Biogenesis of the pore architecture of a voltage-gated potassium channel. Proc Natl Acad Sci U S A 108:3240-5
Lu, Jianli; Hua, Zhengmao; Kobertz, William R et al. (2011) Nascent peptide side chains induce rearrangements in distinct locations of the ribosomal tunnel. J Mol Biol 411:499-510
Tu, Li Wei; Deutsch, Carol (2010) A folding zone in the ribosomal exit tunnel for Kv1.3 helix formation. J Mol Biol 396:1346-60

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