The sporatic or familial loss of checkpoint genes is associated with many types of cancer, especially lymphoma and leukemia. ATM, and the related checkpoint gene ATR, as well as the 9-1-1 """"""""PCNA-like"""""""" checkpoint genes are highly conserved from humans to yeast. We have generated GFP fusions to yeast checkpoint genes, allowing us to observe recruitment of checkpoint proteins to a defined enzymatically induced double stranded DNA break in vivo. We will use these reagents in several ways. First, we will examine the loading of each checkpoint complex onto damaged chromosomes during checkpoint activation and the removal of these proteins when the checkpoint pathway is turned off during checkpoint adaptation. Second, we will use these tools to examine the behavior of broken chromosomes during mitosis. Our data suggests that the broken ends of chromosomes remain associated. We will examine the behavior of broken chromosomes both during a checkpoint arrest and after cells have adapted to the checkpoint and carried the broken chromosome through mitosis. Our previous work has shown that some forms of genomic instability, such as chromosomal translocations, only occur after broken chromosomes are segregated after checkpoint adaptation.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM059691-07
Application #
6932020
Study Section
Special Emphasis Panel (ZRG1-CDF-2 (90))
Program Officer
Zatz, Marion M
Project Start
1999-08-01
Project End
2008-08-31
Budget Start
2005-09-01
Budget End
2006-08-31
Support Year
7
Fiscal Year
2005
Total Cost
$327,479
Indirect Cost
Name
University of California San Francisco
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
094878337
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Mark, Kevin G; Loveless, Theresa B; Toczyski, David P (2016) Isolation of ubiquitinated substrates by tandem affinity purification of E3 ligase-polyubiquitin-binding domain fusions (ligase traps). Nat Protoc 11:291-301
Downey, Michael; Johnson, Jeffrey R; Davey, Norman E et al. (2015) Acetylome profiling reveals overlap in the regulation of diverse processes by sirtuins, gcn5, and esa1. Mol Cell Proteomics 14:162-76
Loveless, Theresa B; Topacio, Benjamin R; Vashisht, Ajay A et al. (2015) DNA Damage Regulates Translation through ?-TRCP Targeting of CReP. PLoS Genet 11:e1005292
Edenberg, Ellen R; Mark, Kevin G; Toczyski, David P (2015) Ndd1 turnover by SCF(Grr1) is inhibited by the DNA damage checkpoint in Saccharomyces cerevisiae. PLoS Genet 11:e1005162
Edenberg, Ellen R; Vashisht, Ajay A; Topacio, Benjamin R et al. (2014) Hst3 is turned over by a replication stress-responsive SCF(Cdc4) phospho-degron. Proc Natl Acad Sci U S A 111:5962-7
Edenberg, Ellen R; Downey, Michael; Toczyski, David (2014) Polymerase stalling during replication, transcription and translation. Curr Biol 24:R445-52
Edenberg, Ellen R; Vashisht, Ajay; Benanti, Jennifer A et al. (2014) Rad53 downregulates mitotic gene transcription by inhibiting the transcriptional activator Ndd1. Mol Cell Biol 34:725-38
Downey, Michael; Knight, Britta; Vashisht, Ajay A et al. (2013) Gcn5 and sirtuins regulate acetylation of the ribosomal protein transcription factor Ifh1. Curr Biol 23:1638-48
Berens, Theresa J; Toczyski, David P (2012) Keeping it together in times of stress: checkpoint function at stalled replication forks. Mol Cell 45:585-6
Berens, Theresa J; Toczyski, David P (2012) Colocalization of Mec1 and Mrc1 is sufficient for Rad53 phosphorylation in vivo. Mol Biol Cell 23:1058-67

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