Cell migration can be divided into three mechanical processes: i) protrusion; ii) adhesion and deadhesion; and iii) cytoskeleton contraction. These processes are coordinated by spatially and temporally organized regulatory signals, many of which are mechano-responsive, i.e. the signaling events are modulated by the mechanical forces they regulate. As the first of the three processes protrusion defines the directionality and persistence of cell movements. The protrusion machinery is also the integrator of internal and external guidance cues, including polarity, chemotactic, haptotactic, and durotactic stimuli. Accordingly, cell protrusion in itself is the result of complex intersections between mechanical and chemical signaling pathways that translate the various inputs into the coordinated activation of pathways that push the cell edge forward. While it is safe to assume that the molecular constituents of these pathways are largely known, we have very little understanding of the mechanism of pathway integration. Here we focus on actin-based protrusion. Dissecting the system of pathways that regulate actin-based protrusions remains a formidable challenge because of the substantial functional overlap and non-linear (feedback and feed forward) relations between pathways. Conventional perturbation approaches, which disrupt one pathway at a time, yield largely uninterpretable results because the overall pathway system immediately adapts. The overarching theme of this proposal is therefore the development of an analytical framework that relies on measuring basal fluctuations of pathway activities in molecularly unperturbed and spontaneous cell protrusions and on statistical inference of the functional hierarchy and timing among intersecting pathways using stochastic time series analysis. The proposed analytical framework will provide unprecedented data on the topology and kinetics of information flows in non-linear and partially redundant pathway systems. While cell protrusion is a particularly attractive problem to develop and demonstrate the power of basal fluctuation analysis the analytical tools to be developed will be general and thus applicable to other cell biological investigations. Building on our findings of the previous funding period we will apply the analytical framework to test hypotheses on the coordination of pathways that initiate and upregulate actin filament assembly in persistent protrusion events during directed migration.

Public Health Relevance

Cell protrusion is a critical step in cell migration, which is a key process in innumerable aspects of normal life and disease. To achieve robustness and diversity in cell protrusion hundreds of molecular sub-processes are finely coordinated. How this coordination happens and where it fails in pathological situations has remained a very hard question to answer. This project focuses on the development of analytical methods that identify the rules of coordination among molecular processes in large dynamic networks.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM071868-08
Application #
9405009
Study Section
Modeling and Analysis of Biological Systems Study Section (MABS)
Program Officer
Deatherage, James F
Project Start
2007-04-15
Project End
2020-11-30
Budget Start
2017-12-01
Budget End
2018-11-30
Support Year
8
Fiscal Year
2018
Total Cost
Indirect Cost
Name
University of Texas Sw Medical Center Dallas
Department
Anatomy/Cell Biology
Type
Schools of Medicine
DUNS #
800771545
City
Dallas
State
TX
Country
United States
Zip Code
75390
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