Epigenetic inheritance of transcriptional programs is essential for cell proliferation, cell differentiation and malignant transformation. Molecularly, epigenetic inheritance of transcriptional programs relies in large part on conservation of chromatin structure through disruptive cell cycle phases. Despite the biological importance of this phenomenon, the details of the molecular mechanisms of epigenetic inheritance are elusive, mostly because of the lack of appropriate experimental approaches. We developed new experimental paradigms, and found that many chromosomal proteins are associated with DNA during replication. However, methylated histones are accumulated on nascent DNA with significant delay. Our preliminary results suggest that following DNA replication, undifferentiated cells, including mouse embryonic stem cells (mESCs), accumulate methylated histones and resume transcription more slowly than differentiated cells of the same origin. We hypothesize that this may create a narrow time window at the time of DNA replication, with a uniquely open chromatin configuration lacking histone modifications and lacking transcription that is very susceptible to receiving signals for differentiation. We will test this hypothesis by examining th accumulation of different modified histone residues, histone-modifying and chromatin remodeling proteins following DNA replication during differentiation of mouse ESCs. We will also examine when transcription resumes in these cells, and when components of the transcriptional machinery are recruited to nascent DNA. Finally, we will test a hypothesis that the short period of time just after DNA replication, when chromatin is not modified, provides a window of opportunity for acquiring signals for differentiation through association of the newly induced transcription factors. This may account for a higher plasticity of undifferentiated states in acquiring new transcriptional programs. Overall, this proposal will greatly contribute to the ke epigenetic issues during cell differentiation.

Public Health Relevance

Development is accompanied by gradual differentiation of embryonic or progenitor cells into the somatic cells of the adults. The mechanisms responsible for maintaining cell identity and for cell differentiation rely on epigenetic inheritance of the gee activation and repression programs. We propose to investigate key questions concerning molecular mechanisms of these processes, and the results of these studies will greatly benefit our understanding of fundamental biological and health related issues.

Agency
National Institute of Health (NIH)
Type
Research Project (R01)
Project #
2R01GM075141-09A1
Application #
8753785
Study Section
Development - 2 Study Section (DEV2)
Program Officer
Carter, Anthony D
Project Start
Project End
Budget Start
Budget End
Support Year
9
Fiscal Year
2014
Total Cost
Indirect Cost
Name
Thomas Jefferson University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
City
Philadelphia
State
PA
Country
United States
Zip Code
19107
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Johnston, Danika M; Sedkov, Yurii; Petruk, Svetlana et al. (2011) Ecdysone- and NO-mediated gene regulation by competing EcR/Usp and E75A nuclear receptors during Drosophila development. Mol Cell 44:51-61
Petruk, Svetlana; Smith, Sheryl T; Sedkov, Yurii et al. (2008) Association of trxG and PcG proteins with the bxd maintenance element depends on transcriptional activity. Development 135:2383-90
Petruk, Svetlana; Sedkov, Yurii; Brock, Hugh W et al. (2007) A model for initiation of mosaic HOX gene expression patterns by non-coding RNAs in early embryos. RNA Biol 4:1-6
Petruk, Svetlana; Sedkov, Yurii; Riley, Kristen M et al. (2006) Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference. Cell 127:1209-21