This A1 competitive renewal of GM088276 is a multidisciplinary collaboration to investigate the biosynthesis of diphthamide, a unique protein posttranslational modification that occurs on archaeal and eukaryotic translation elongation factor 2. This modification has been known for over 30 years and is the target of several bacterial toxins, including diphtheria toxin. However, the biosynthesis and biological function are still poorly understood. Previous studies by others suggest that there are five proteins (Dph1-5) required for the first two steps of the biosynthesis, while no proteins were identified for the thid (and last) amidation step. Interestingly, deletion of several of the biosynthesis genes is found in tumors. With previous grant support, we made a number of important findings, including the discovery of a novel radical SAM enzyme for the first step of diphthamide biosynthesis and the identification of two new proteins required for the last step of the biosynthesis. This renewal wil build on these finding to further understand the chemistry and enzymology of diphthamide biosynthesis and to elucidate the complete biosynthetic pathway for the first time. The interesting Fe-S enzyme chemistry that will be elucidated in this proposal will significantly expand the chemistry scope and mechanistic understanding of Fe-S enzymes. The understanding of diphthamide biosynthesis will help to understand the biological functions of diphthamide and why deletion of diphthamide biosynthesis genes promotes tumorigenesis.

Public Health Relevance

This proposal aims to study the biosynthesis of diphthamide as a way to understand its biological function and the mechanism of tumor formation in the absence of diphthamide biosynthesis. The proposed studies not only can lead to better understandings of novel enzymes, but may also lead to new ways to treat or prevent cancer.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
2R01GM088276-05A1
Application #
8696039
Study Section
Macromolecular Structure and Function A Study Section (MSFA)
Program Officer
Gerratana, Barbara
Project Start
2009-08-01
Project End
2018-03-31
Budget Start
2014-07-05
Budget End
2015-03-31
Support Year
5
Fiscal Year
2014
Total Cost
Indirect Cost
Name
Cornell University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Dong, Min; Horitani, Masaki; Dzikovski, Boris et al. (2016) Organometallic Complex Formed by an Unconventional Radical S-Adenosylmethionine Enzyme. J Am Chem Soc 138:9755-8
Lin, Zhewang; Dong, Min; Zhang, Yugang et al. (2016) Cbr1 is a Dph3 reductase required for the tRNA wobble uridine modification. Nat Chem Biol 12:995-997
Dong, Min; Su, Xiaoyang; Dzikovski, Boris et al. (2014) Dph3 is an electron donor for Dph1-Dph2 in the first step of eukaryotic diphthamide biosynthesis. J Am Chem Soc 136:1754-7
Lin, Zhewang; Su, Xiaoyang; Chen, Wei et al. (2014) Dph7 catalyzes a previously unknown demethylation step in diphthamide biosynthesis. J Am Chem Soc 136:6179-82
Su, Xiaoyang; Lin, Zhewang; Lin, Hening (2013) The biosynthesis and biological function of diphthamide. Crit Rev Biochem Mol Biol 48:515-21
Su, Xiaoyang; Chen, Wei; Lee, Wankyu et al. (2012) YBR246W is required for the third step of diphthamide biosynthesis. J Am Chem Soc 134:773-6
Su, Xiaoyang; Lin, Zhewang; Chen, Wei et al. (2012) Chemogenomic approach identified yeast YLR143W as diphthamide synthetase. Proc Natl Acad Sci U S A 109:19983-7
Zhu, Xuling; Dzikovski, Boris; Su, Xiaoyang et al. (2011) Mechanistic understanding of Pyrococcus horikoshii Dph2, a [4Fe-4S] enzyme required for diphthamide biosynthesis. Mol Biosyst 7:74-81
Lin, Hening (2011) S-Adenosylmethionine-dependent alkylation reactions: when are radical reactions used? Bioorg Chem 39:161-70
Zhang, Yang; Zhu, Xuling; Torelli, Andrew T et al. (2010) Diphthamide biosynthesis requires an organic radical generated by an iron-sulphur enzyme. Nature 465:891-6

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