The goal of this project is to determine how growth, development and stress responses are coordinated in Arabidopsis, a model plant with extensive genetic, genomic and proteomic resources. This will be accomplished through detailed mechanistic studies that will provide insights into fundamental biological processes, steroid hormone signaling and autophagy, that are conserved across eukaryotes. Brassinosteroids (BRs) are plant steroid hormones that promote growth. Autophagy occurs in both plants and animals to degrade organelles and proteins, especially under stress conditions. Our preliminary work has established several interaction points between BR and autophagy pathways. First, BES1, a transcription factor mediating BR responses, is degraded by selective autophagy, mediated by the ubiquitin receptor DSK2. Furthermore, phosphorylation of DSK2 by BIN2, a negative regulator in the BR signaling pathway, increases the interaction between DSK2 and ATG8, resulting in BES1 degradation. Second, TOR, a negative regulator of autophagy, is required for BR-mediated growth, and BRs inhibit autophagy likely via BIN2 interaction with TOR. We hypothesize that BR and autophagy pathways crosstalk through multiple mechanisms to coordinate plant growth and stress responses: (a) upon phosphorylation by BIN2, DSK2 acts as a phospho-regulated autophagy receptor for BES1, and BES1 ubiquitination therefore leads to its degradation by selective autophagy. This in turn slows down plant growth under stress conditions; (b) BRs regulate TOR to promote growth and inhibit autophagy through BIN2 phosphorylation of TOR. To test and expand on these hypotheses we propose the following two Specific Aims: (1) To establish the functions of selective autophagy receptor DSK2 and E3 ubiquitin ligases BAF1 and BAR1 in mediating BES1 degradation through autophagy; (2) To determine the mechanism of BR regulation of TOR via BIN2, and the effect of this regulation on growth and autophagy under normal and stress conditions. These studies will leverage the genetic and genomic resources in Arabidopsis and use cutting-edge proteomics to study ubiquitination and phosphorylation at the individual protein and proteome-wide levels. These innovative approaches have the potential not only to reveal specific mechanisms of crosstalk between steroid signaling and protein degradation pathways, but also provide transformative concepts and information on the integration of growth and stress responses across eukaryotes. For example, autophagy is involved in many human diseases including neurodegenerative diseases (e.g. Amyotrophic Lateral Sclerosis, Parkinson's and Huntington's) and cancer. In addition, the degradation of BES1 by autophagy is reminiscent of that of ?-catenin in WNT signaling and HIF2? in hypoxia responses, which play essential roles in growth, development, stress responses and disease in animals and humans. The proposed studies can therefore provide important insight into processes related to human health.

Public Health Relevance

Autophagy is critical for stress responses and pathogen defense in many organisms and is a major component affecting pathogenesis of neurodegenerative diseases including ALS (Amyotrophic Lateral Sclerosis), Parkinson's and Huntington's. It is also a target for cancer therapy. In addition, the degradation of BES1 by autophagy is reminiscent of that of ?-catenin in WNT signaling and HIF2? in hypoxia responses, which play essential roles in growth, development, stress responses and diseases in humans as well. The proposed studies have the potential to provide important insight into processes related to human health.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM120316-02
Application #
9403264
Study Section
Development - 1 Study Section (DEV1)
Program Officer
Maas, Stefan
Project Start
2017-01-01
Project End
2020-12-31
Budget Start
2018-01-01
Budget End
2018-12-31
Support Year
2
Fiscal Year
2018
Total Cost
Indirect Cost
Name
Iowa State University
Department
Genetics
Type
Schools of Arts and Sciences
DUNS #
005309844
City
Ames
State
IA
Country
United States
Zip Code
50011
Pu, Yunting; Luo, Xinjuan; Bassham, Diane C (2017) TOR-Dependent and -Independent Pathways Regulate Autophagy in Arabidopsis thaliana. Front Plant Sci 8:1204
Nolan, Trevor M; Brennan, Benjamin; Yang, Mengran et al. (2017) Selective Autophagy of BES1 Mediated by DSK2 Balances Plant Growth and Survival. Dev Cell 41:33-46.e7
Nolan, Trevor; Chen, Jiani; Yin, Yanhai (2017) Cross-talk of Brassinosteroid signaling in controlling growth and stress responses. Biochem J 474:2641-2661
Wang, Ping; Mugume, Yosia; Bassham, Diane C (2017) New advances in autophagy in plants: Regulation, selectivity and function. Semin Cell Dev Biol :
Pu, Yunting; Soto-Burgos, Junmarie; Bassham, Diane C (2017) Regulation of autophagy through SnRK1 and TOR signaling pathways. Plant Signal Behav 12:e1395128