This proposal involves a multi-disciplinary research effort directed at structure/function/inhibition studies of enzymes in pyrimidine nucleotide and nucleic metabolism which share common mechanistic themes. These enzymes include thymidylate synthase, DNA-cytosine methyltransferase, tRNA-methyltransferase, and deoxycytidylate hydroxymethylase. Our objective are aimed at obtaining fundamental biochemical information, with the belief that such knowledge will provide insight to exploit what is found to assist in controlling disease. These studies are particularly relevant to the understanding of anticancer agents such as fluorouracil and 5,8- dideazafolates, and in the design of new chemotherapeutic agents. We will continue and extend our studies on the structure, function and inhibition of the enzyme thymidylate synthase. These include studies of mechanism-based inhibitors, detailed kinetic studies of inhibitors such as 5-fluoro-2'-deoxyuridylate, and mutagenesis; they also include computer-assisted molecular modelling and structural investigations. Most of our initial studies will use the enzyme from L. casei. We will also complete studies on the heterologous expression of the human enzyme and, when appropriate, redirect efforts towards this important enzyme. We shall continue investigations on the DNA cytosine methyltransferases which are directed at understanding the mechanism of these enzymes, as well as aspects of DNA-enzyme interactions. We shall continue studies on the tRNA methyltransferase. Here, we shall develop analogous high-expression systems, investigate the catalytic mechanism of this enzyme, and investigate studies on recognition of tRNA by systems, investigate the catalytic mechanism of this enzyme, and investigate studies on recognition of tRNA by this enzyme. finally, we shall attempt to identify the active site nucleophile of deoxycytidylate hydroxymethylase.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Method to Extend Research in Time (MERIT) Award (R37)
Project #
5R37CA014394-20
Application #
3481690
Study Section
Physiological Chemistry Study Section (PC)
Project Start
1978-09-01
Project End
1994-02-28
Budget Start
1992-03-01
Budget End
1993-02-28
Support Year
20
Fiscal Year
1992
Total Cost
Indirect Cost
Name
University of California San Francisco
Department
Type
Schools of Medicine
DUNS #
073133571
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Meyskens Jr, Frank L; Mukhtar, Hasan; Rock, Cheryl L et al. (2016) Cancer Prevention: Obstacles, Challenges and the Road Ahead. J Natl Cancer Inst 108:
Gonzalez-Pacanowska, Dolores; Ruiz-Perez, Luis M; Carreras-Gomez, Maria Angeles et al. (2003) The structural roles of conserved Pro196, Pro197 and His199 in the mechanism of thymidylate synthase. Protein Eng 16:607-14
Kawase, S; Cho, S W; Rozelle, J et al. (2000) Replacement set mutagenesis of the four phosphate-binding arginine residues of thymidylate synthase. Protein Eng 13:557-63
Variath, P; Liu, Y; Lee, T T et al. (2000) Effects of subunit occupancy on partitioning of an intermediate in thymidylate synthase mutants. Biochemistry 39:2429-35
Morse, R J; Kawase, S; Santi, D V et al. (2000) Energetic contributions of four arginines to phosphate-binding in thymidylate synthase are more than additive and depend on optimization of ""effective charge balance"". Biochemistry 39:1011-20
Liu, Y; Barrett, J E; Schultz, P G et al. (1999) Tyrosine 146 of thymidylate synthase assists proton abstraction from the 5-position of 2'-deoxyuridine 5'-monophosphate. Biochemistry 38:848-52
Finer-Moore, J S; Liu, L; Birdsall, D L et al. (1998) Contributions of orientation and hydrogen bonding to catalysis in Asn229 mutants of thymidylate synthase. J Mol Biol 276:113-29
Liu, Y; Santi, D V (1998) A continuous spectrophotometric assay for thymidine and deoxycytidine kinases. Anal Biochem 264:259-62
Huang, L; Pookanjanatavip, M; Gu, X et al. (1998) A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst. Biochemistry 37:344-51
Chiericatti, G; Santi, D V (1998) Aspartate 221 of thymidylate synthase is involved in folate cofactor binding and in catalysis. Biochemistry 37:9038-42

Showing the most recent 10 out of 71 publications