Organisms living on Earth have to cope with daily changes in their environment. The circadian clock is an endogenous oscillator, with a period of approximately 24 hours, which enables organisms to coordinate metabolism, physiology, and development in anticipation of diurnal and seasonal environmental changes therefore enhancing their fitness. The intricate network underlying the circadian oscillator at the molecular level has long been thought to rely on interlocked transcriptional-translational feedback loops. However, additional layers of regulation at the cellular and organismal level are required to explain the complex behavior of the system. To unravel this wiring and elucidate the role of key clock components, in this proposal we plan to combine a set of biochemical, genetic, functional genomic, and bioinformatic approaches. TOC1 is an essential player in the core oscillator and recent work in our laboratory suggests that it can bind to RNA. By solving the atomic structure of TOC1 we seek to dissect its molecular properties. This will be instrumental to comprehend its regulatory mechanism and its function maintaining plant rhythmicity and regulating the expression of output genes. GI is also an oscillator component required for the proper ticking of the circadian clock and acts as a key regulatory hub directly connecting the clock to a plethora of physiological processes. To investigate the pivotal role of GI in the regulation of output pathways we propose to uncover and characterize its interactome network through molecular, genetic and proteomic analyses. These results will shed light on its regulatory function in key physiological processes providing important advances in our understanding of how the circadian clock impacts plant development. Finally, it has been recently revealed that the plant clock might have a central oscillator, similar to the mammalian system, able to coordinate peripheral clocks. To examine the organization of the plant circadian system, we will perform a genome-wide tissue- specific expression analysis with exceptional spatio-temporal resolution, complementing it with a phenotypical characterization. Altogether, the approach outlined here will expand our understanding of tissue and organ specific clocks and their architecture to regulate physiological and developmental processes. The knowledge gained from this proposal will contribute to develop a comprehensive view of the circadian clock as a network expanding from the molecule to the organismal level. This concept can be combined with insights from other organisms to improve our interpretation of circadian biology, ultimately impacting research in human health and circadian associated disorders.

Public Health Relevance

Endogenous timekeepers control the synchronization of biological processes at the most advantageous times of the day and year. Biological clocks confer an adaptive advantage by integrating environmental conditions and internal physiology to optimize growth, development, and survival. Increasing the scope of our knowledge of the clock mechanisms can improve our understanding of its role in human biology and diseases.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Method to Extend Research in Time (MERIT) Award (R37)
Project #
7R37GM067837-16
Application #
9613985
Study Section
Cellular Signaling and Regulatory Systems Study Section (CSRS)
Program Officer
Sesma, Michael A
Project Start
2003-06-01
Project End
2021-12-31
Budget Start
2018-01-01
Budget End
2018-12-31
Support Year
16
Fiscal Year
2018
Total Cost
Indirect Cost
Name
University of Southern California
Department
Neurology
Type
Schools of Medicine
DUNS #
072933393
City
Los Angeles
State
CA
Country
United States
Zip Code
90033
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