The goal of our research is to understand the mechanism of HIV-1 Tat-induced transcription at the HIV-1 promoter in T cells. Tat regulates the transition from mRNA initiation to elongation through direct interaction with the host cell P-TEFb RNAPII CTD kinase. During the previous period of funding, we identified SKIP as a P-TEFb-associated elongation factor that functions downstream of the Tat:P-TEFb to recruit c-Myc and TRRAP to the viral genome and promote H3K4 methylation at the integrated HIV-1 proviral promoter. We find that both SKIP, c-Myc and Tat:P-TEFb interact with MLL1:Menin, one of several mammalian H3K4 methyltransferase enzymes, to regulate HIV-1 H3K4 levels. Stable binding of SKIP to chromatin requires H2B ubiquitination, which is known to be essential for H3K79 methylation by the Dot1:AF4 complex, implicating SKIP in H3K79 methylation. This latter link is especially intriguing given the AF4 interacts directly with P-TEFb and is required for its CTD kinase and transcription activities in vivo. Here we will examine the role of these factors in establishing elongation and H3K4 and H3K79 methylation upon induction by Tat:P-TEFb, and also carry out biochemical studies to identify new components of the native SKIP transcription elongation complex, which may also be essential for Tat transactivation. Importantly, SKIP is known to also repress its target genes in the absence of induction, through binding to the CBF-1 enhancer factor, whicih was recently shown to be critical for repression of HIV-1 in latently-infected CD4(+) T cells. Therefore, we will also assess the role of SKIP and associated corepressors in the silencing of viral transcription in J-Lat cells, a model of HIV-1 latency.

Public Health Relevance

Our project is focused on understanding the process whereby HIV-1 genes are expressed, in particular to identify the host cell proteins that are used to turn on HIV-1 genes, and to understand in detail why HIV-1 genes are not expressed in latently-infected cells. A detailed knowledge of how these new proteins function might one day be used to develop new drugs that slow down viral replication and/or to eliminate latent viruses in the host.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
High Priority, Short Term Project Award (R56)
Project #
2R56AI044615-11A1
Application #
7919645
Study Section
AIDS Molecular and Cellular Biology Study Section (AMCB)
Program Officer
Sharma, Opendra K
Project Start
2009-09-12
Project End
2010-08-31
Budget Start
2009-09-12
Budget End
2010-08-31
Support Year
11
Fiscal Year
2009
Total Cost
$473,500
Indirect Cost
Name
Salk Institute for Biological Studies
Department
Type
DUNS #
078731668
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Chen, Yupeng; Zhang, Lirong; Estarás, Conchi et al. (2014) A gene-specific role for the Ssu72 RNAPII CTD phosphatase in HIV-1 Tat transactivation. Genes Dev 28:2261-75
Brès, Vanessa; Yoshida, Tomonori; Pickle, Loni et al. (2009) SKIP interacts with c-Myc and Menin to promote HIV-1 Tat transactivation. Mol Cell 36:75-87