This proposal is a continuation of the training grant in Structural Biology of the Graduate Group in Biophysics at UCSF (GM08284). The program emphasizes interdisciplinary training at the interface of biology, physics and chemistry. A hallmark of the program is its use of structural experiment and computation to attack fundamental questions of intermolecular interactions, enzyme mechanisms and cell processes. The predoctoral students in the program rank among the best of any program at UCSF, and enter the program with backgrounds ranging from physics and chemistry to engineering, mathematics and biology. Their interests span a wide range of areas including structure-based drug design, the biochemical basis of disease, structural cell biology and macromolecular engineering. Training consists of a core curriculum, a minimum of three laboratory rotations, extensive practice in presenting journal clubs and research talks, an oral qualifying exam, and thesis research. Students completing this training are well prepared to bring their excellent skills and quantitative backgrounds to the solution of the most challenging problems in biomedical research. The proposal requests funding for thirteen positions.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Institutional National Research Service Award (T32)
Project #
2T32GM008284-16
Application #
6553455
Study Section
National Institute of General Medical Sciences Initial Review Group (BRT)
Program Officer
Flicker, Paula F
Project Start
1988-09-30
Project End
2008-06-30
Budget Start
2003-07-01
Budget End
2004-06-30
Support Year
16
Fiscal Year
2003
Total Cost
$358,217
Indirect Cost
Name
University of California San Francisco
Department
Pharmacology
Type
Schools of Pharmacy
DUNS #
094878337
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Autzen, Henriette E; Myasnikov, Alexander G; Campbell, Melody G et al. (2018) Structure of the human TRPM4 ion channel in a lipid nanodisc. Science 359:228-232
Mravic, Marco; Hu, Hailin; Lu, Zhenwei et al. (2018) De novo designed transmembrane peptides activating the ?5?1 integrin. Protein Eng Des Sel 31:181-190
Paquette, David R; Mugridge, Jeffrey S; Weinberg, David E et al. (2018) Application of a Schizosaccharomyces pombe Edc1-fused Dcp1-Dcp2 decapping enzyme for transcription start site mapping. RNA 24:251-257
Mavor, David; Barlow, Kyle A; Asarnow, Daniel et al. (2018) Extending chemical perturbations of the ubiquitin fitness landscape in a classroom setting reveals new constraints on sequence tolerance. Biol Open 7:
Hendel, Nathan L; Thomson, Matthew; Marshall, Wallace F (2018) Diffusion as a Ruler: Modeling Kinesin Diffusion as a Length Sensor for Intraflagellar Transport. Biophys J 114:663-674
Barlow, Kyle A; Ó Conchúir, Shane; Thompson, Samuel et al. (2018) Flex ddG: Rosetta Ensemble-Based Estimation of Changes in Protein-Protein Binding Affinity upon Mutation. J Phys Chem B 122:5389-5399
Otten, Renee; Liu, Lin; Kenner, Lillian R et al. (2018) Rescue of conformational dynamics in enzyme catalysis by directed evolution. Nat Commun 9:1314
Elting, Mary Williard; Suresh, Pooja; Dumont, Sophie (2018) The Spindle: Integrating Architecture and Mechanics across Scales. Trends Cell Biol 28:896-910
Zhang, Yan; Burkhardt, David H; Rouskin, Silvi et al. (2018) A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation. Mol Cell 70:274-286.e7
Calhoun, Sara; Korczynska, Magdalena; Wichelecki, Daniel J et al. (2018) Prediction of enzymatic pathways by integrative pathway mapping. Elife 7:

Showing the most recent 10 out of 184 publications