Over the last year we have continued to make progress using cryo-electron tomography for exploring the architecture of bacterial cells, especially with Bdellovibrio bacteriovorus. These are small delta-proteobacterial cells that feed on other gram-negative bacteria, including human pathogens. The most striking feature of attack phase B. bacteriovorus cells under the light microscope is their motility. Swimming cells resemble elongated wiggling rods but precise determination of their shape, and its influence on internal cellular architecture is difficult using light microscopy since they are very small, move rapidly through the field of focus, and turn abruptly in random directions. Our analysis of intact frozen-hydrated cells using cryo-electron tomography showed for the first time that Gram-negative bacteria can bend to extreme curvatures without suffering any obvious structural damage. We demonstrated that B. bacteriovorus cells are capable of substantial flexibility and local deformations of their outer and inner membranes without loss of cell integrity. These shape changes can occur in less than 2 minutes, and analysis of the internal architecture of highly bent cells shows that the overall distribution of molecular machines and the nucleoid is similar to those seen in moderately bent cells. B. bacteriovorus cells appear to contain an extensive internal network of short and long filamentous structures. These findings led to the novel hypothesis that rearrangements of these structures, in combination with the unique properties of the cell envelope underlie the remarkable ability of B. bacteriovorus cells to find and enter bacterial prey. Flexible shape changes also appear critical for egress from exit pores of the bdelloplast following the completion of cell replication.In addition to our discovery of the intrinsic flexiblity of B. bacteriovorus, we followed up with cryo-electron tomographic analysis of the nucleoid of these cells leading to the first in situ 3D structures of the bacterial nucleoid and direct visualization of MreB and ribosomes at the boundary of the nucleoid. Our findings provide direct structural evidence for spiral organization of the bacterial nucleoid and suggest a role for MreB in regulation of nucleoid architecture and localization of the chemotaxis apparatus. Studies are underway to improve the resolution of these studies to further explore the internal organization of the interior of these small bacterial cells.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Investigator-Initiated Intramural Research Projects (ZIA)
Project #
1ZIABC010827-06
Application #
8552849
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
6
Fiscal Year
2012
Total Cost
$282,176
Indirect Cost
Name
National Cancer Institute Division of Basic Sciences
Department
Type
DUNS #
City
State
Country
Zip Code
Borgnia, Mario J; Banerjee, Soojay; Merk, Alan et al. (2016) Using Cryo-EM to Map Small Ligands on Dynamic Metabolic Enzymes: Studies with Glutamate Dehydrogenase. Mol Pharmacol 89:645-51
Schauder, David M; Kuybeda, Oleg; Zhang, Jinjin et al. (2013) Glutamate receptor desensitization is mediated by changes in quaternary structure of the ligand binding domain. Proc Natl Acad Sci U S A 110:5921-6
Milne, Jacqueline L S; Borgnia, Mario J; Bartesaghi, Alberto et al. (2013) Cryo-electron microscopy--a primer for the non-microscopist. FEBS J 280:28-45
Tran, Erin E H; Borgnia, Mario J; Kuybeda, Oleg et al. (2012) Structural mechanism of trimeric HIV-1 envelope glycoprotein activation. PLoS Pathog 8:e1002797
Khursigara, Cezar M; Lan, Ganhui; Neumann, Silke et al. (2011) Lateral density of receptor arrays in the membrane plane influences sensitivity of the E. coli chemotaxis response. EMBO J 30:1719-29
Butan, Carmen; Hartnell, Lisa M; Fenton, Andrew K et al. (2011) Spiral architecture of the nucleoid in Bdellovibrio bacteriovorus. J Bacteriol 193:1341-50
Heymann, Jurgen A W; Shi, Dan; Kim, Sang et al. (2009) 3D imaging of mammalian cells with ion-abrasion scanning electron microscopy. J Struct Biol 166:1-7
Hildebrand, Mark; Kim, Sang; Shi, Dan et al. (2009) 3D imaging of diatoms with ion-abrasion scanning electron microscopy. J Struct Biol 166:316-28
Milne, Jacqueline L S; Subramaniam, Sriram (2009) Cryo-electron tomography of bacteria: progress, challenges and future prospects. Nat Rev Microbiol 7:666-75
Borgnia, Mario J; Subramaniam, Sriram; Milne, Jacqueline L S (2008) Three-dimensional imaging of the highly bent architecture of Bdellovibrio bacteriovorus by using cryo-electron tomography. J Bacteriol 190:2588-96

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