The CCRIFX is clearly meeting a critical subset of CCR bioinformatics needs, and the staff is continually improving the level of analysis support to the CCR community. It has become increasingly clear that most investigators have vastly underestimated the complexity involved with NGS analysis. The CCRIFX has positioned itself as the central resource for the analysis of NGS data. This is reflected in the fact that the number of publications involving the core's analysis is on the rise. At the end of 2011, the core was involved in one manuscript in development. As of March of this year (2013), the core is actively working as coauthors on at least 6 manuscripts with several more emerging as strong possibilities as research efforts mature. In addition, the core contributed as co-authors on 4 posters and was acknowledged in 2 manuscripts. Investigators have confirmed through post-service evaluations that the CCRIFX is helping to advance research efforts, contribute creativity and innovative thought as well as have a favorable impact on future publications. As expected, the sequencing technologies supported emphasize NGS as well as microarray technologies. A significant majority of requests involve data produced in-house. A substantial number of requests require external consultation with experts outside the core. Both ABCC and CCR bioinformatics personnel have provided critical expertise in regularly scheduled prioritization, status, and science meetings.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Scientific Cores Intramural Research (ZIC)
Project #
1ZICBC011532-02
Application #
8938490
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
2
Fiscal Year
2014
Total Cost
Indirect Cost
Name
Basic Sciences
Department
Type
DUNS #
City
State
Country
Zip Code
Dine, Jennifer L; O'Sullivan, Ciara C; Voeller, Donna et al. (2016) The TRAIL receptor agonist drozitumab targets basal B triple-negative breast cancer cells that express vimentin and Axl. Breast Cancer Res Treat 155:235-51
Kennedy, Mark W; Chalamalasetty, Ravindra B; Thomas, Sara et al. (2016) Sp5 and Sp8 recruit ?-catenin and Tcf1-Lef1 to select enhancers to activate Wnt target gene transcription. Proc Natl Acad Sci U S A 113:3545-50
Rothermel, Luke D; Sabesan, Arvind C; Stephens, Daniel J et al. (2016) Identification of an Immunogenic Subset of Metastatic Uveal Melanoma. Clin Cancer Res 22:2237-49
Johnson, Randall C; Nelson, George W; Zagury, Jean-Francois et al. (2015) ALDsuite: Dense marker MALD using principal components of ancestral linkage disequilibrium. BMC Genet 16:23
Gara, Sudheer Kumar; Jia, Li; Merino, Maria J et al. (2015) Germline HABP2 Mutation Causing Familial Nonmedullary Thyroid Cancer. N Engl J Med 373:448-55
He, Ximiao; Tillo, Desiree; Vierstra, Jeff et al. (2015) Methylated Cytosines Mutate to Transcription Factor Binding Sites that Drive Tetrapod Evolution. Genome Biol Evol 7:3155-69
Kasembeli, Alex N; Duarte, Raquel; Ramsay, Michèle et al. (2015) APOL1 Risk Variants Are Strongly Associated with HIV-Associated Nephropathy in Black South Africans. J Am Soc Nephrol 26:2882-90
Si, Han; Scaffidi, Paola; Merchant, Anand et al. (2015) Genome-wide redistribution of BRD4 binding sites in transformation resistant cells. Genom Data 3:33-35
Limou, Sophie; Nelson, George W; Lecordier, Laurence et al. (2015) Sequencing rare and common APOL1 coding variants to determine kidney disease risk. Kidney Int 88:754-63
Jhuraney, Ankita; Velkova, Aneliya; Johnson, Randall C et al. (2015) BRCA1 Circos: a visualisation resource for functional analysis of missense variants. J Med Genet 52:224-30

Showing the most recent 10 out of 29 publications