Abstract: Bacteriocins are a large class of ribosomally synthesized toxins that have been shown to be effective antibiotics, food preservatives, anti-infectives and anti-cancer therapeutics. It is believed that about half of all bacteria and archaea produce at least one bacteriocin, and current efforts in genome analysis will likely lead to a tremendous increase in the number and diversity of this class of antibiotics. Many of these bacteriocins have been isolated as natural products;thus little is known about how they are biosynthesized. We have developed the first in vitro method to reconstitute the highly potent bacteriocin Streptolysin S (SLS). Reconstitution of the SLS toxin has demonstrated that a precursor peptide and three conserved enzymes work in concert to produce an active toxin. We have furthermore demonstrated for the first time that the synthetase enzyme complex is capable of accepting non-cognate substrates. We propose that this system can therefore be used with a library of substrates to generate entirely novel artificial peptide bacteriocins, many of which will undoubtedly have therapeutic value. Many of these compounds are likely to be potent antibiotics;importantly, many of these will have other pharmacological and therapeutic uses that we have not yet uncovered. The work detailed herein proposes a wide-scale approach for the biosynthesis and screening of this class of novel bacteriocins. First, we will produce a library of novel bacteriocins using our reconstitution method whereby the synthetase complex converts a library of precursors to active compounds. Second, we will develop an integrated high-throughput screening approach to discover activities of these novel bacteriocins.
These aims will not only lead to a tremendous increase in the discovery of novel antimicrobial and therapeutic compounds, but will for the first time initiate an integrated approach to the utility of engineered bacteriocins in general. Public Health Relevance: Antibiotic resistance is one of the most important health concerns today, as the current arsenal of antibiotics is rapidly becoming ineffective. This proposal presents a method of generating an entirely new class of antibiotic compounds, many of which will undoubtedly have tremendous public health value.

Agency
National Institute of Health (NIH)
Institute
Office of The Director, National Institutes of Health (OD)
Type
NIH Director’s New Innovator Awards (DP2)
Project #
1DP2OD008468-01
Application #
8146372
Study Section
Special Emphasis Panel (ZGM1-NDIA-S (01))
Program Officer
Basavappa, Ravi
Project Start
2011-09-30
Project End
2016-06-30
Budget Start
2011-09-30
Budget End
2016-06-30
Support Year
1
Fiscal Year
2011
Total Cost
$2,250,000
Indirect Cost
Name
University of Notre Dame
Department
Biology
Type
Schools of Arts and Sciences
DUNS #
824910376
City
Notre Dame
State
IN
Country
United States
Zip Code
46556
Flaherty, Rebecca A; Donahue, Deborah L; Carothers, Katelyn E et al. (2018) Neutralization of Streptolysin S-Dependent and Independent Inflammatory Cytokine IL-1? Activity Reduces Pathology During Early Group A Streptococcal Skin Infection. Front Cell Infect Microbiol 8:211
Kane, Trevor L; Carothers, Katelyn E; Lee, Shaun W (2018) Virulence Factor Targeting of the Bacterial Pathogen Staphylococcus aureus for Vaccine and Therapeutics. Curr Drug Targets 19:111-127
Fields, Francisco R; Lee, Shaun W; McConnell, Michael J (2017) Using bacterial genomes and essential genes for the development of new antibiotics. Biochem Pharmacol 134:74-86
Flaherty, Rebecca A; Lee, Shaun W (2016) Implementation of a Permeable Membrane Insert-based Infection System to Study the Effects of Secreted Bacterial Toxins on Mammalian Host Cells. J Vis Exp :
Flaherty, Rebecca A; Puricelli, Jessica M; Higashi, Dustin L et al. (2015) Streptolysin S Promotes Programmed Cell Death and Enhances Inflammatory Signaling in Epithelial Keratinocytes during Group A Streptococcus Infection. Infect Immun 83:4118-33
Bao, Yun-Juan; Liang, Zhong; Mayfield, Jeffrey A et al. (2015) CovRS-Regulated Transcriptome Analysis of a Hypervirulent M23 Strain of Group A Streptococcus pyogenes Provides New Insights into Virulence Determinants. J Bacteriol 197:3191-205
Maxson, Tucker; Deane, Caitlin D; Molloy, Evelyn M et al. (2015) HIV protease inhibitors block streptolysin S production. ACS Chem Biol 10:1217-26
Morton, James T; Freed, Stefan D; Lee, Shaun W et al. (2015) A large scale prediction of bacteriocin gene blocks suggests a wide functional spectrum for bacteriocins. BMC Bioinformatics 16:381
Ugrinov, Krastyu G; Freed, Stefan D; Thomas, Clayton L et al. (2015) A multiparametric computational algorithm for comprehensive assessment of genetic mutations in mucopolysaccharidosis type IIIA (Sanfilippo syndrome). PLoS One 10:e0121511
Weigel, Kelsey J; Shen, Luqun; Thomas, Clayton L et al. (2015) Design and evaluation of a peptide-based immunotoxin for breast cancer therapeutics. FEBS Open Bio 5:202-8