The overall goal of Project 1 is to use the human histone chaperone HIRA and the yeast post-translational modification enzyme, Sir2, as models to understand the structural basis for epigenetic control in aging and longevity;and to develop small molecule Sir2 effectors as reagents to study the linkage between epigenetic events and cell aging. HIRA forms a complex with ASFla to mediate transcriptional activation and formation of senescent heterochromatin, a process associated with tissue aging. Dr. Adams (Project 4) has also characterized new and related UBN proteins that interact with HIRA. These observations lead to the testable hypothesis that HIRA coordinates interactions with both ASFla and UBN proteins for chromatin regulation in senescence and gene activation. In preliminary studies, we have collaborated with Dr. 'Adams to characterize the structure and biochemistry of an ASFla/HIRA complex. The yeast Sir2 protein, and its orthologs in higher eukaryotes, are NAD+ dependent histone deacetylases. Yeast Sir2 promotes gene silencing and lifespan extension and its SIRT1 human ortholog has been implicated to counteract ageassociated diseases such as type-II diabetes, obesity and neurodegenerative disorders in mammals. In preliminary studies, we have determined crystal structures of the yeast Sir2 protein, Hst2, in various liganded forms and hypothesize that we can to use these structures as a molecular scaffold for the rational design of small molecule Sir2 effectors. In this proposal, we will combine biochemical, structural and small molecule screening methodologies to test our hypotheses with the following Specific Aims: (1) Determine the structural and biochemical basis for formation of a ASFla/HIRA/histone complex, (2) Determine the structural and biochemical basis for the role of UBN 1 and UBN2 in HIRA function, and (3) Develop small molecule activators and inhibitors of sirtuins as reagents to probe the involvement of sirtuins in epigenetic regulation and longevity in yeast. Our studies will be complemented by the largely biochemical, genetic, cell biology and organismal studies on the HIRA and sirtuin proteins that will be carried out by the other projects of the program, and the protein production capability of Core B, will contribute to the general understanding of the link between epigentics and aging and may lead to the development of small molecule compounds to treat age-associated disorders.

Agency
National Institute of Health (NIH)
Institute
National Institute on Aging (NIA)
Type
Research Program Projects (P01)
Project #
7P01AG031862-02
Application #
7916789
Study Section
Special Emphasis Panel (ZAG1)
Project Start
Project End
Budget Start
2009-03-01
Budget End
2010-02-28
Support Year
2
Fiscal Year
2009
Total Cost
$348,803
Indirect Cost
Name
University of Pennsylvania
Department
Type
DUNS #
042250712
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Ray-Gallet, Dominique; Ricketts, M Daniel; Sato, Yukari et al. (2018) Functional activity of the H3.3 histone chaperone complex HIRA requires trimerization of the HIRA subunit. Nat Commun 9:3103
Lin-Shiao, Enrique; Lan, Yemin; Coradin, Mariel et al. (2018) KMT2D regulates p63 target enhancers to coordinate epithelial homeostasis. Genes Dev 32:181-193
Dou, Zhixun; Berger, Shelley L (2018) Senescence Elicits Stemness: A Surprising Mechanism for Cancer Relapse. Cell Metab 27:710-711
Berson, Amit; Sartoris, Ashley; Nativio, Raffaella et al. (2017) TDP-43 Promotes Neurodegeneration by Impairing Chromatin Remodeling. Curr Biol 27:3579-3590.e6
Bonini, Nancy M; Berger, Shelley L (2017) The Sustained Impact of Model Organisms-in Genetics and Epigenetics. Genetics 205:1-4
Dou, Zhixun; Ghosh, Kanad; Vizioli, Maria Grazia et al. (2017) Cytoplasmic chromatin triggers inflammation in senescence and cancer. Nature 550:402-406
Mews, Philipp; Donahue, Greg; Drake, Adam M et al. (2017) Acetyl-CoA synthetase regulates histone acetylation and hippocampal memory. Nature 546:381-386
Yang, Ting-Lin B; Chen, Qijun; Deng, Jennifer T et al. (2017) Mutual reinforcement between telomere capping and canonical Wnt signalling in the intestinal stem cell niche. Nat Commun 8:14766
Cole, John J; Robertson, Neil A; Rather, Mohammed Iqbal et al. (2017) Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions. Genome Biol 18:58
Feng, Zijie; Wang, Lei; Sun, Yanmei et al. (2017) Menin and Daxx Interact to Suppress Neuroendocrine Tumors through Epigenetic Control of the Membrane Metallo-Endopeptidase. Cancer Res 77:401-411

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