Barrett's esophagus: pathways and prevention. We have identified three areas in which we can make adifference. The first is investigation of the evolution of clones with acquired epigenetic alterations andgenomic abnormalities to determine the extent to which they and measures of genome instability predictprogression from Barrett's esophagus (BE) to esophageal adenocarcinoma (EA). The secondisinvestigation of associations of host and environmental risk and protective factors with measures of instability(telomeres, fragile sites) and clonal evolution to evaluate the extent to which they may modulate progressionfrom BE to EA. The third is to develop robust, clinically compatible biomarker platforms and candidateinterventions to prevent EA that can be used in other centers, multicenter studies and randomized trials toimprove patient care and population health. Each member of the Executive Committee bringscomplementary expertise to the P01 in at least two disciplines, including genetics, cancer biology, biomarkerresearch, epidemiology, aging, evolutionary biology, computational science, biostatistics, andgastroenterology. The Leadership Core is responsible for planning, implementing, evaluating andcoordinating scientific progress at daily, weekly, monthly, and yearly intervals to assure that that the P01achieves its strategic goals. We have established a network of leadership that extends from the ExternalAdvisory Board into each project and core. The Executive Committee meetings are open to everyone in theP01. Study designs, implementation, progress and analysis are all presented and reviewed in regularlyscheduled P01 meetings (average 2.2 per month in the current funding period). The External Advisory Boardwill assemble formally to review the P01 annually as well as informally as appropriate. Project and CoreCoordinators, under the direction of the Project Leaders and Core Directors, will assure timelyimplementation of the decisions of the Executive Committee as well as being a vehicle for early identificationof opportunities and challenges that can be brought to the attention of the Executive Committee.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Program Projects (P01)
Project #
5P01CA091955-07
Application #
7670153
Study Section
Special Emphasis Panel (ZCA1)
Project Start
Project End
Budget Start
2008-07-01
Budget End
2009-06-30
Support Year
7
Fiscal Year
2008
Total Cost
$135,541
Indirect Cost
Name
Fred Hutchinson Cancer Research Center
Department
Type
DUNS #
078200995
City
Seattle
State
WA
Country
United States
Zip Code
98109
Barry, Peter; Vatsiou, Alexandra; Spiteri, Inmaculada et al. (2018) The Spatiotemporal Evolution of Lymph Node Spread in Early Breast Cancer. Clin Cancer Res 24:4763-4770
Dong, Jing; Levine, David M; Buas, Matthew F et al. (2018) Interactions Between Genetic Variants and Environmental Factors Affect Risk of Esophageal Adenocarcinoma and Barrett's Esophagus. Clin Gastroenterol Hepatol 16:1598-1606.e4
Xia, Li Charlie; Ai, Dongmei; Lee, Hojoon et al. (2018) SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolution. Gigascience 7:
Galipeau, Patricia C; Oman, Kenji M; Paulson, Thomas G et al. (2018) NSAID use and somatic exomic mutations in Barrett's esophagus. Genome Med 10:17
Martinez, Pierre; Mallo, Diego; Paulson, Thomas G et al. (2018) Evolution of Barrett's esophagus through space and time at single-crypt and whole-biopsy levels. Nat Commun 9:794
Dong, Jing; Buas, Matthew F; Gharahkhani, Puya et al. (2018) Determining Risk of Barrett's Esophagus and Esophageal Adenocarcinoma Based on Epidemiologic Factors and Genetic Variants. Gastroenterology 154:1273-1281.e3
Chowell, Diego; Napier, James; Gupta, Rohan et al. (2018) Modeling the Subclonal Evolution of Cancer Cell Populations. Cancer Res 78:830-839
Maley, Carlo C; Aktipis, Athena; Graham, Trevor A et al. (2017) Classifying the evolutionary and ecological features of neoplasms. Nat Rev Cancer 17:605-619
Cheng, Yichen; Dai, James Y; Paulson, Thomas G et al. (2017) Quantification of Multiple Tumor Clones Using Gene Array and Sequencing Data. Ann Appl Stat 11:967-991
Reid, Brian J (2017) Genomics, Endoscopy, and Control of Gastroesophageal Cancers: A Perspective. Cell Mol Gastroenterol Hepatol 3:359-366

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