The combination of doxorubicin (adriamycin) and cyclophosphamide, so-called AC chemotherapy, is commonly used for the clinical treatment of breast and other cancers. DNA apurinic/apyrimidinic (AP) sites are a common result of alkylating agents such as nitrogen mustards. The cytotoxicity of alkylating agents can be enhanced by methoxyamine, which forms a conjugate with AP sites and inhibits repair. We propose a new reactivity of doxorubicin and related agents in which they form a covalent conjugate with AP sites in DNA, and this adduct is highly cytotoxic. The following interconnected Aims are proposed to address this hypothesis. Project 1 will demonstrate that the anthracycline antitumor agents doxorubicin, mitoxantrone and pixantrone form covalent conjugates with AP sites in duplex DNA through an imine linkage (Specific Aim 1). Imines linkages form reversibily; we therefore propose to synthesize new analogues that form more stable hydrazine, semicarbazone, and oxime covalent linkages to AP sites. Nitrogen mustards cause complex forms of DNA damage. In order to evaluate the biological processing of nitrogen mustard DNA adduct, we will synthesize structurally defined oligonucleotides that contain DNA adducts of nor-nitrogen mustard (the active form of cyclophosphamide) and thioTEPA. This includes N5-substituted formamidopyrimidine-dG adducts derived from imidazole ring-opened of the cationic N7-alkylated dG (Specific Aim 2). We will also synthesize complex secondary products from nitrogen mustards cross-links in which one of the cross-linked dGs has undergone deglycosylation to an AP site. Based on deglycosylation rates, we predict thioTEPA and nor- nitrogen mustard will lead to a high burden of AP sites compared to other alkylating agents. The extent to which these alkylating agents form AP sites in DNA in vitro (calf thymus DNA and cultured human breast cancer cells) and in vivo (rodent models and white blood cells from breast cancer patients undergoing AC chemotherapy) as well as AP site conjugates of doxorubicin and related agents will be quantified by ion trap multistage mass spectrometry (Specific Aim 3). Project 1 will work closely with the DNA Synthesis Resource Core to provide site-specifically modified oligonucleotides containing nor-nitrogen mustard and thioTEPA adducts (Aim 1) as well as covalent drug conjugates of an AP site (Aim 2) to Project 2 for replication, mutagenesis and repair studies, and Project 3 for structural analysis. Project 2 will examine the cytotoxicity of the anthracyclines and new analogues in combination with nor-nitrogen mustard or thioTEPA in cultured human breast cancer cell lines.

Public Health Relevance

The combination of doxorubicin (adriamycin) and cyclophosphamide, so called AC chemotherapy, is widely used clinically for the treatment of breast and other forms of cancer. We propose to elucidate a new and potentially synergistic mechanism of action of this chemotherapeutic regimen and develop novel biomonitoring protocols to measure their DNA lesions in humans. The DNA biomarker data can be used to assess patient- specific differences in DNA damage and lead to improved therapeutic efficacy.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Program Projects (P01)
Project #
5P01CA160032-28
Application #
9982810
Study Section
Special Emphasis Panel (ZCA1)
Project Start
Project End
Budget Start
2020-08-01
Budget End
2021-07-31
Support Year
28
Fiscal Year
2020
Total Cost
Indirect Cost
Name
Vanderbilt University Medical Center
Department
Type
DUNS #
965717143
City
Nashville
State
TN
Country
United States
Zip Code
37203
Sha, Yan; Minko, Irina G; Malik, Chanchal K et al. (2017) Error-prone replication bypass of the imidazole ring-opened formamidopyrimidine deoxyguanosine adduct. Environ Mol Mutagen 58:182-189
Minko, Irina G; Rizzo, Carmelo J; Lloyd, R Stephen (2017) Mutagenic potential of nitrogen mustard-induced formamidopyrimidine DNA adduct: Contribution of the non-canonical ?-anomer. J Biol Chem 292:18790-18799
Su, Yan; Egli, Martin; Guengerich, F Peter (2017) Human DNA polymerase ? accommodates RNA for strand extension. J Biol Chem 292:18044-18051
Patra, Amritraj; Politica, Dustin A; Chatterjee, Arindom et al. (2016) Mechanism of Error-Free Bypass of the Environmental Carcinogen N-(2'-Deoxyguanosin-8-yl)-3-aminobenzanthrone Adduct by Human DNA Polymerase??. Chembiochem 17:2033-2037
Choi, Jeong-Yun; Patra, Amritaj; Yeom, Mina et al. (2016) Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase ?. J Biol Chem 291:21063-21073
Minko, Irina G; Jacobs, Aaron C; de Leon, Arnie R et al. (2016) Catalysts of DNA Strand Cleavage at Apurinic/Apyrimidinic Sites. Sci Rep 6:28894
Patra, Amritraj; Su, Yan; Zhang, Qianqian et al. (2016) Structural and Kinetic Analysis of Miscoding Opposite the DNA Adduct 1,N6-Ethenodeoxyadenosine by Human Translesion DNA Polymerase ?. J Biol Chem 291:14134-45
Su, Yan; Egli, Martin; Guengerich, F Peter (2016) Mechanism of Ribonucleotide Incorporation by Human DNA Polymerase ?. J Biol Chem 291:3747-56
Xu, Wenyan; Kool, Daniel; O'Flaherty, Derek K et al. (2016) O6-2'-Deoxyguanosine-butylene-O6-2'-deoxyguanosine DNA Interstrand Cross-Links Are Replication-Blocking and Mutagenic DNA Lesions. Chem Res Toxicol 29:1872-1882
Patra, Amitraj; Zhang, Qianqian; Guengerich, F Peter et al. (2016) Mechanisms of Insertion of dCTP and dTTP Opposite the DNA Lesion O6-Methyl-2'-deoxyguanosine by Human DNA Polymerase ?. J Biol Chem 291:24304-24313

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