: The objective of Project 1 is to detect, map and characterize polymorphic genes that contribute to variation in risk of cardiovascular disease (CVD). The focus in this Program Project (the San Antonio Family Hearth Study, SAFHS) is on extended Mexican American families ascertained without regard to disease status. During the current grant period each family member is being genotyped for 414 short tandem repeat markers in a 10 centimorgan map. Using genome screen data from the first ten genotyped families (Pedigree Set A, with nearly 500 individuals), QTLs have been detected and mapped that influence leptin, fat mass, BMI, insulin, 2 hour glucose, LDL-3-C, HDL-C, HDL2a unesterified cholesterol, evidence for linkage, additional, more closely spaced markers are being typed for use in finer scale mapping strategies. Identification of the functional alleles for a few of the best characterized of these genes will be pursued in Project 3. In Project 1, taking advantage of the resource of families with extensive genotypic and phenotypic data that has been created in the past ten years, linkage analyses will be pursued for phenotypes that exhibit substantial heritabilities but for which significant linkages were not detected in Pedigree Set A (e.g., apolipoproteins, selected lipoproteins size classes, fasting glucose, 2-hour insulin, fibrinogen, C-reactive protein, and measures of carotid intima-media thickness). Linkage signals also will be strengthened and refined for other QTLs for which significant evidence of linkage already has been detected (e.g., QTLs for BMI on chromosome 17, HDL-C on chromosome 16, insulin/glucose ratio on chromosome 3, and HDL2a unesterfied cholesterol on chromosome 8). These analyses will incorporate additional markers, and associations will be sought with polymorphisms in positional candidate genes. Several new phenotypes related to the role of adipose tissue as an endocrine organ will be examined, and the pleiotropic effects of QTLs detected in the current and proposed grant periods, on other CVD risk factors will be characterized. The longitudinal data being accumulated for the families in the SAFHS will be exploited to examine genetic effects on age-related changes in CVD risk.

Agency
National Institute of Health (NIH)
Institute
National Heart, Lung, and Blood Institute (NHLBI)
Type
Research Program Projects (P01)
Project #
2P01HL045522-11
Application #
6600920
Study Section
Project Start
2002-07-01
Project End
2007-05-31
Budget Start
Budget End
Support Year
11
Fiscal Year
2002
Total Cost
$498,057
Indirect Cost
Name
Southwest Foundation for Biomedical Research
Department
Type
DUNS #
City
San Antonio
State
TX
Country
United States
Zip Code
78245
Konigorski, Stefan; Wang, Yuan; Cigsar, Candemir et al. (2018) Estimating and testing direct genetic effects in directed acyclic graphs using estimating equations. Genet Epidemiol 42:174-186
Espin-Garcia, Osvaldo; Craiu, Radu V; Bull, Shelley B (2018) Two-phase designs for joint quantitative-trait-dependent and genotype-dependent sampling in post-GWAS regional sequencing. Genet Epidemiol 42:104-116
Chien, Li-Chu; Chiu, Yen-Feng (2018) General retrospective mega-analysis framework for rare variant association tests. Genet Epidemiol 42:621-635
Ning, Chao; Kang, Huimin; Zhou, Lei et al. (2017) Performance Gains in Genome-Wide Association Studies for Longitudinal Traits via Modeling Time-varied effects. Sci Rep 7:590
Kulkarni, Hemant; Mamtani, Manju; Wong, Gerard et al. (2017) Genetic correlation of the plasma lipidome with type 2 diabetes, prediabetes and insulin resistance in Mexican American families. BMC Genet 18:48
Mamtani, Manju; Kulkarni, Hemant; Wong, Gerard et al. (2016) Lipidomic risk score independently and cost-effectively predicts risk of future type 2 diabetes: results from diverse cohorts. Lipids Health Dis 15:67
Kulkarni, Hemant; Mamtani, Manju; Peralta, Juan Manuel et al. (2016) Lack of Association between SLC30A8 Variants and Type 2 Diabetes in Mexican American Families. J Diabetes Res 2016:6463214
Hanson, Robert L; Leti, Fatjon; Tsinajinnie, Darwin et al. (2016) The Arg59Trp variant in ANGPTL8 (betatrophin) is associated with total and HDL-cholesterol in American Indians and Mexican Americans and differentially affects cleavage of ANGPTL3. Mol Genet Metab 118:128-37
Mamtani, Manju; Kulkarni, Hemant; Dyer, Thomas D et al. (2016) Genome- and epigenome-wide association study of hypertriglyceridemic waist in Mexican American families. Clin Epigenetics 8:6
Kumar, Satish; Curran, Joanne E; Glahn, David C et al. (2016) Utility of Lymphoblastoid Cell Lines for Induced Pluripotent Stem Cell Generation. Stem Cells Int 2016:2349261

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