. GENOMICS CORE. The Genomics Core (the Core), was established through Phase I of Epigenomics COBRE at the University of North Dakota and has become an indispensable resource for researchers throughout UND. The principal mission of the Core is to guide investigators through the design, acquisition, and analysis of large-scale epigenomics data. In addition to assisting with research projects, the Core facilitates management, storage and sharing of large-scale data sets generated by these research projects, consistent with NIH guidelines. The Core plays a vital role in educating the UND research community on using computational tools, incorporating big-data projects into biological laboratories and actively supports collaborations outside of the Epigenetics group. Due to the explosion of recent discoveries in the field of epigenomics as well as initial success of early Core supported projects, the Core has become a key part of Epigenetics research at UND. The demand for Core?s services is expected to increase further through the next several years. Phase II proposal builds on a solid foundation established in Phase I by focusing on sustainability of the facility in all three aspects of our operation. In the sequencing laboratory, there has been continuous growth of sample submission numbers. Phase II efforts will focus on standardization of library preparation procedures, improving faculty access to sequencing options, and developing a cost center that can support the day to day operations of the Core. The bioinformatics capabilities will continue to grow as well by expanding compute and storage resources and offering more data analysis pipelines as standardized services. To ensure effectiveness of our educational efforts, we will continue to spearhead our graduate student curriculum to keep up with the latest technologies in the field, and will offer workshops to faculty, postdocs and students across campus. These initiatives will help the Core expand its services in research and education, lower the barriers for new users to enter the field of Epigenomics and, taken together, will help achieve long-term sustainability of the Core and success of the Epigenetics Working Group.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Exploratory Grants (P20)
Project #
2P20GM104360-06A1
Application #
9795828
Study Section
Special Emphasis Panel (ZGM1)
Project Start
Project End
Budget Start
2019-07-01
Budget End
2020-06-30
Support Year
6
Fiscal Year
2019
Total Cost
Indirect Cost
Name
University of North Dakota
Department
Type
DUNS #
102280781
City
Grand Forks
State
ND
Country
United States
Zip Code
58202
Sun, Yuyang; Schaar, Anne; Sukumaran, Pramod et al. (2018) TGF?-induced epithelial-to-mesenchymal transition in prostate cancer cells is mediated via TRPM7 expression. Mol Carcinog 57:752-761
Anderson, Cindy M; Gillespie, Shannon L; Thiele, Doria K et al. (2018) Effects of Maternal Vitamin D Supplementation on the Maternal and Infant Epigenome. Breastfeed Med 13:371-380
Bhattacharya, Atrayee; Kumar, Janani; Hermanson, Kole et al. (2018) The calcium channel proteins ORAI3 and STIM1 mediate TGF-? induced Snai1 expression. Oncotarget 9:29468-29483
Casselli, Timothy; Tourand, Yvonne; Scheidegger, Adam et al. (2018) DNA Methylation by Restriction Modification Systems Affects the Global Transcriptome Profile in Borrelia burgdorferi. J Bacteriol 200:
Zhang, Ying; Darland, Diane; He, Yan et al. (2018) REDUCTION OF PM2.5 TOXICITY ON HUMAN ALVEOLAR EPITHELIAL CELLS A549 BY TEA POLYPHENOLS. J Food Biochem 42:
Hovde, Moriah J; Larson, Garret H; Vaughan, Roxanne A et al. (2018) Model systems for analysis of dopamine transporter function and regulation. Neurochem Int :
Casselli, Timothy; Qureshi, Humaira; Peterson, Elizabeth et al. (2017) MicroRNA and mRNA Transcriptome Profiling in Primary Human Astrocytes Infected with Borrelia burgdorferi. PLoS One 12:e0170961
Challasivakanaka, Sathya; Zhen, Juan; Smith, Margaret E et al. (2017) Dopamine transporter phosphorylation site threonine 53 is stimulated by amphetamines and regulates dopamine transport, efflux, and cocaine analog binding. J Biol Chem 292:19066-19075
Krout, Danielle; Rodriquez, Meghan; Brose, Stephen A et al. (2017) Inhibition of the Serotonin Transporter Is Altered by Metabolites of Selective Serotonin and Norepinephrine Reuptake Inhibitors and Represents a Caution to Acute or Chronic Treatment Paradigms. ACS Chem Neurosci 8:1011-1018
Simmler, Linda D; Anacker, Allison M J; Levin, Michael H et al. (2017) Blockade of the 5-HT transporter contributes to the behavioural, neuronal and molecular effects of cocaine. Br J Pharmacol 174:2716-2738

Showing the most recent 10 out of 24 publications