This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Research and development tasks of the Core include: (i) providing NE-INBRE researchers and students from geographically separate institutions around the clock access to existing bioinformatics, biocomputing and information technology (IT) resources available at UNMC and on the Internet around the world;(ii) developing an advanced IT infrastructure allowing the NE-INBRE researchers and administration to function in an unified fashion;and (iii) developing the bioinformatics tools necessary to support the NE-INBRE Projects and Cores. The staff of the core has implemented a Content Management and Information Sharing System (CMISS), which is an easy-to-use website maintenance and data sharing tool (http://brin.unmc.edu). The system does not require any separate application to be installed or uploaded to the client's computers. CMISS empowers authorized users to quickly make changes to the website's content, as well as to share data. Authorized users can instantly create and edit web pages, news groups, calendars, image galleries, change navigation menus, upload files to share with collaborators, etc. This system will enable NE-INBRE to maintain its presence on the Web and rapidly disseminate the most recent information about its research and educational activities, publications, seminars, conferences, etc. Recently, staff of the core designed a new website (http://microarray.unmc.edu), providing researchers with the overview of the UNMC Microarray Resources available to NE-INBRE researchers. The personnel of the core were instrumental in organizing a Bioinformatics minitrack of the """"""""Nebraska EPSCoR Research Expo'exhibition and conference, which was held in April 2005 at the Qwest Convention Center in Omaha.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Exploratory Grants (P20)
Project #
2P20RR016469-09
Application #
7960246
Study Section
Special Emphasis Panel (ZRR1-RI-4 (01))
Project Start
2009-05-01
Project End
2010-04-30
Budget Start
2009-05-01
Budget End
2010-04-30
Support Year
9
Fiscal Year
2009
Total Cost
$114,389
Indirect Cost
Name
University of Nebraska Medical Center
Department
Genetics
Type
Schools of Medicine
DUNS #
168559177
City
Omaha
State
NE
Country
United States
Zip Code
68198
Barta, Cody L; Liu, Huizhan; Chen, Lei et al. (2018) RNA-seq transcriptomic analysis of adult zebrafish inner ear hair cells. Sci Data 5:180005
Liu, Huizhan; Chen, Lei; Giffen, Kimberlee P et al. (2018) Cell-Specific Transcriptome Analysis Shows That Adult Pillar and Deiters' Cells Express Genes Encoding Machinery for Specializations of Cochlear Hair Cells. Front Mol Neurosci 11:356
Wehrkamp, Cody J; Natarajan, Sathish Kumar; Mohr, Ashley M et al. (2018) miR-106b-responsive gene landscape identifies regulation of Kruppel-like factor family. RNA Biol 15:391-403
Lopez, Wilfredo; Page, Alexis M; Carlson, Darby J et al. (2018) Analysis of immune-related genes during Nora virus infection of Drosophila melanogaster using next generation sequencing. AIMS Microbiol 4:123-139
Gong, Qiang; Wang, Chao; Zhang, Weiwei et al. (2017) Assessment of T-cell receptor repertoire and clonal expansion in peripheral T-cell lymphoma using RNA-seq data. Sci Rep 7:11301
Lu, Guoqing; Luhr, Jamie; Stoecklein, Andrew et al. (2017) Complete Genome Sequences ofPseudomonas fluorescensBacteriophages Isolated from Freshwater Samples in Omaha, Nebraska. Genome Announc 5:
Azadmanesh, Jahaun; Trickel, Scott R; Weiss, Kevin L et al. (2017) Preliminary neutron diffraction analysis of challenging human manganese superoxide dismutase crystals. Acta Crystallogr F Struct Biol Commun 73:235-240
Bouska, A; Zhang, W; Gong, Q et al. (2017) Combined copy number and mutation analysis identifies oncogenic pathways associated with transformation of follicular lymphoma. Leukemia 31:83-91
Azadmanesh, Jahaun; Trickel, Scott R; Borgstahl, Gloria E O (2017) Substrate-analog binding and electrostatic surfaces of human manganese superoxide dismutase. J Struct Biol 199:68-75
Bonham-Carter, Oliver; Thapa, Ishwor; From, Steven et al. (2017) A study of bias and increasing organismal complexity from their post-translational modifications and reaction site interplays. Brief Bioinform 18:69-84

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