Within the short span of 5 years, the techniques of biomedical informatics (bioinformatics) have become universally applied in medical investigation. Cutting edge investigation in dermatology now requires ready access to expert and affordable basic and special techniques and services. The mission of the Bioinformatics Core Laboratory is to provide services, facilities, and education to support the bioinformatics needs of SDRC Investigators. It is organized under the Director, Lei Liu, Ph.D. (who also serves as Director of the Bioinformatics Center in the W.M. Keck Center for Comparative and Functional Genomics, University of Illinois at Urbana-Champaign) and two Co-Directors (Harold Garner, Ph.D., Professor of Internal Medicine at UT Southwestern and Mark E. Mummert, Ph.D., Assistant Professor of Dermatology at UT Southwestern).
Specific aims are to: (1) provide biomedical informatics resources administered by the Core Director to SDRC Investigators on the UT Southwestern campus; (2) provide training and education in the performance of bioinformatics searches for participating SDRC investigators; and (3) make available to SDRC Investigators advances in the new field of massively parallel gene expression quantification, using new computer tools that facilitate construction of unique microarrays. This will include access to cutting-edge technology for the fabrication, use, and interpretation of data derived from use-specific genetic arrays and the construction and evaluation of high-density cDNA arrays for expression profiling of matched normal and experimental (pathological) tissues. These services will allow SDRC Investigators to employ contemporaneous informatics techniques throughout the 5-year granting period.

Agency
National Institute of Health (NIH)
Institute
National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS)
Type
Center Core Grants (P30)
Project #
5P30AR041940-11
Application #
6598835
Study Section
Special Emphasis Panel (ZAR1)
Project Start
2002-06-01
Project End
2006-05-31
Budget Start
Budget End
Support Year
11
Fiscal Year
2002
Total Cost
Indirect Cost
City
Dallas
State
TX
Country
United States
Zip Code
75390
Acharya, Asha; Baek, Seung Tae; Banfi, Serena et al. (2011) Efficient inducible Cre-mediated recombination in Tcf21 cell lineages in the heart and kidney. Genesis 49:870-7
Chapman, Shelby L; Sicot, F-X; Davis, Elaine C et al. (2010) Fibulin-2 and fibulin-5 cooperatively function to form the internal elastic lamina and protect from vascular injury. Arterioscler Thromb Vasc Biol 30:68-74
Yanagisawa, Hiromi; Davis, Elaine C (2010) Unraveling the mechanism of elastic fiber assembly: The roles of short fibulins. Int J Biochem Cell Biol 42:1084-93
Straud, Sarah; Zubovych, Iryna; De Brabander, Jef K et al. (2010) Inhibition of iron uptake is responsible for differential sensitivity to V-ATPase inhibitors in several cancer cell lines. PLoS One 5:e11629
Choi, Jiwon; Bergdahl, Andreas; Zheng, Qian et al. (2009) Analysis of dermal elastic fibers in the absence of fibulin-5 reveals potential roles for fibulin-5 in elastic fiber assembly. Matrix Biol 28:211-20
Jaeckle Santos, Lane J; Xing, Chao; Barnes, Robert B et al. (2008) Refined mapping of X-linked reticulate pigmentary disorder and sequencing of candidate genes. Hum Genet 123:469-76
Takayama, Yoshiharu; May, Petra; Anderson, Richard G W et al. (2005) Low density lipoprotein receptor-related protein 1 (LRP1) controls endocytosis and c-CBL-mediated ubiquitination of the platelet-derived growth factor receptor beta (PDGFR beta). J Biol Chem 280:18504-10
Wang, Huixia; He, Xuming; Band, Mark et al. (2005) A study of inter-lab and inter-platform agreement of DNA microarray data. BMC Genomics 6:71
Sinha, Suwan K; Zachariah, Sunny; Quinones, Herson I et al. (2002) Role of TRAF3 and -6 in the activation of the NF-kappa B and JNK pathways by X-linked ectodermal dysplasia receptor. J Biol Chem 277:44953-61
Sellati, T J; Waldrop, S L; Salazar, J C et al. (2001) The cutaneous response in humans to Treponema pallidum lipoprotein analogues involves cellular elements of both innate and adaptive immunity. J Immunol 166:4131-40

Showing the most recent 10 out of 56 publications