The primary function of the Bioinformatics Core is to provide bioinformatics services and infrastructure for the MSK research community. This can range from providing complete analysis services beginning with raw data and ending with publishable results or it can consist of assisting and supporting the growing number of computational researchers with specific data analyses. A central mission is the creation and maintenance of both a repository of robust, vetted software applications and pipelines that implement the current state-of-the- art data analysis and a collection of well documented methods and best-practices. This ensures that critical analysis steps are done in a reliable, reproducible, and understandable way, freeing the laboratory-based staff to focus on the analysis that is specific to their particular experiment and saving them time and effort in re- inventing well known bioinformatics processes. This also leads to a far more cost-effective process with greater quality control. This consistency enables the institution to provide sharable and consistent results that can be further used for integrative and pan-group analysis. The Core also plays a central role in training staff in both methods and in the use of the institution?s high performance computing infrastructure. Additionally, the Bioinformatics Core provides customized computational and statistical assistance, facilities collaboration and integrative analysis via data and code sharing, enables access to institutional databases and provides applications for the creation and curation of research data. The Core trains computational and bioinformatics staff working in concert with other departments to develop and teach workshops and training seminars. Finally, the Core works on the research and development of algorithmic best practices, evaluates current applications and pipelines, and deploys new tools as new experimental methods and assays are developed.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Center Core Grants (P30)
Project #
5P30CA008748-54
Application #
9858294
Study Section
Subcommittee I - Transistion to Independence (NCI)
Project Start
Project End
Budget Start
2020-01-01
Budget End
2020-12-31
Support Year
54
Fiscal Year
2020
Total Cost
Indirect Cost
Name
Sloan-Kettering Institute for Cancer Research
Department
Type
DUNS #
064931884
City
New York
State
NY
Country
United States
Zip Code
10065
Skoulidis, Ferdinandos; Goldberg, Michael E; Greenawalt, Danielle M et al. (2018) STK11/LKB1 Mutations and PD-1 Inhibitor Resistance in KRAS-Mutant Lung Adenocarcinoma. Cancer Discov 8:822-835
Stolnicu, Simona; Barsan, Iulia; Hoang, Lien et al. (2018) Diagnostic Algorithmic Proposal Based on Comprehensive Immunohistochemical Evaluation of 297 Invasive Endocervical Adenocarcinomas. Am J Surg Pathol 42:989-1000
Takeda, Toshikazu; Tin, Amy L; Corradi, Renato B et al. (2018) Topography of Prostate Cancer Recurrence After Radiation Therapy: A Detailed Mapping Study of Salvage Radical Prostatectomy Specimens. Eur Urol 73:488-490
Autio, Karen A; Dreicer, Robert; Anderson, Justine et al. (2018) Safety and Efficacy of BIND-014, a Docetaxel Nanoparticle Targeting Prostate-Specific Membrane Antigen for Patients With Metastatic Castration-Resistant Prostate Cancer: A Phase 2 Clinical Trial. JAMA Oncol 4:1344-1351
Tseng, Jill H; Aloisi, Alessia; Sonoda, Yukio et al. (2018) Less versus more radical surgery in stage IB1 cervical cancer: A population-based study of long-term survival. Gynecol Oncol 150:44-49
Lin, Yen Hwa; Hong, Linda X; Hunt, Margie A et al. (2018) Use of a constrained hierarchical optimization dataset enhances knowledge-based planning as a quality assurance tool for prostate bed irradiation. Med Phys 45:4364-4369
Liopyris, Konstantinos; Navarrete-Dechent, Cristian; Dusza, Stephen W et al. (2018) Clinical and dermoscopic features associated with lichen planus-like keratoses that undergo skin biopsy: A single-center, observational study. Australas J Dermatol :
Yélamos, Oriol; Navarrete-Dechent, Cristián; Marchetti, Michael A et al. (2018) Clinical and dermoscopic features of cutaneous BAP1-inactivated melanocytic tumors: Results of a multicenter case-control study by the International Dermoscopy Society. J Am Acad Dermatol :
Tamura, Ryo; Pratt, Edwin C; Grimm, Jan (2018) Innovations in Nuclear Imaging Instrumentation: Cerenkov Imaging. Semin Nucl Med 48:359-366
O'Sullivan, Timothy E; Sun, Joseph C (2018) Determination of the Fate and Function of Innate Lymphoid Cells Following Adoptive Transfer of Innate Lymphoid Cell Precursors. Methods Mol Biol 1799:109-119

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