MOLECULAR ANALYSIS / TRANSLATION RESEARCH GROUP COMPREHENSIVE GENOMICS SHARED FACILITY (CGSF) ABSTRACT The goal of the Comprehensive Genomics Shared Facility (CGSF) is to provide Cancer Center investigators access to cutting-edge genomic resources and methodologies designed to facilitate and strengthen the quality of genetic, genomic, and molecular studies in cancer related research. The Comprehensive Genomics Shared Facility accomplishes this goal through two interrelated components: the on campus UAB Next-Generation and Sanger Sequencing (NGSS) arm, and the HudsonAlpha Institute for Biotechnology (HAIB) Next-Generation and Clinical Sequencing arm. This arrangement provides UAB Cancer Center members unprecedented access to state-of-the-art technologies for genetic and genomic analysis for basic research and clinical studies. Each component brings valuable resources to center members. The NGSS provides onsite consultation and service for various projects that require different types of genomic technologies. These include standard Sanger sequencing, human cell line identification (including cancer cell lines), SNP genotyping assays and Next-Generation Sequencing services (RNA-Seq, ChIP-Seq, microRNA-Seq, Exome-Seq, Custom amplicons, Microbiome, Metagenomics, and mitochondrial sequencing). The HAIB component offers very high throughput services for production-level whole genome sequencing and support for development and routine processing of clinical samples that require or benefit from a CLIA environment. The CGSF supports basic researchers investigating the mechanisms of cancer development, progression and metastasis as well as clinical researchers pursuing precision medicine approaches and provides the tools they need to efficiently and effectively contribute significant findings to the field of cancer research.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Center Core Grants (P30)
Project #
5P30CA013148-48
Application #
9895641
Study Section
Subcommittee I - Transistion to Independence (NCI)
Project Start
Project End
Budget Start
2020-04-01
Budget End
2021-03-31
Support Year
48
Fiscal Year
2020
Total Cost
Indirect Cost
Name
University of Alabama Birmingham
Department
Type
DUNS #
063690705
City
Birmingham
State
AL
Country
United States
Zip Code
35294
Williams, Adele P; Waters, Alicia M; Stewart, Jerry E et al. (2018) A novel retinoid X receptor agonist, UAB30, inhibits rhabdomyosarcoma cells in vitro. J Surg Res 228:54-62
Carson, Tiffany L; Wang, Fuchenchu; Cui, Xiangqin et al. (2018) Associations Between Race, Perceived Psychological Stress, and the Gut Microbiota in a Sample of Generally Healthy Black and White Women: A Pilot Study on the Role of Race and Perceived Psychological Stress. Psychosom Med 80:640-648
McCaw, Tyler R; Randall, Troy D; Arend, Rebecca C (2018) Overcoming immune suppression with epigenetic modification in ovarian cancer. Transl Res :
Frugé, Andrew D; Cases, Mallory G; Howell, Carrie R et al. (2018) Fingernail and toenail clippings as a non-invasive measure of chronic cortisol levels in adult cancer survivors. Cancer Causes Control 29:185-191
Samykutty, Abhilash; Grizzle, William E; Fouts, Benjamin L et al. (2018) Optoacoustic imaging identifies ovarian cancer using a microenvironment targeted theranostic wormhole mesoporous silica nanoparticle. Biomaterials 182:114-126
Geng, Mengxin; Austin, Frank; Shin, Ronald et al. (2018) Covalent Structure and Bioactivity of the Type AII Lantibiotic Salivaricin A2. Appl Environ Microbiol 84:
Powell, T Clark; Dilley, Sarah E; Bae, Sejong et al. (2018) The Impact of Racial, Geographic, and Socioeconomic Risk Factors on the Development of Advanced-Stage Cervical Cancer. J Low Genit Tract Dis 22:269-273
Friedman, Gregory K; Bernstock, Joshua D; Chen, Dongquan et al. (2018) Enhanced Sensitivity of Patient-Derived Pediatric High-Grade Brain Tumor Xenografts to Oncolytic HSV-1 Virotherapy Correlates with Nectin-1 Expression. Sci Rep 8:13930
Subramaniam, Akila; Blanchard, Christina T; Erickson, Britt K et al. (2018) Feasibility of Complete Salpingectomy Compared With Standard Postpartum Tubal Ligation at Cesarean Delivery: A Randomized Controlled Trial. Obstet Gynecol 132:20-27
Kasten, Benjamin B; Oliver, Patsy G; Kim, Harrison et al. (2018) 212Pb-Labeled Antibody 225.28 Targeted to Chondroitin Sulfate Proteoglycan 4 for Triple-Negative Breast Cancer Therapy in Mouse Models. Int J Mol Sci 19:

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