The objective of the Bioinformatics Shared Resource (BISR) is to support the application of advanced computational and bioinformatics resources for cancer research conducted by NCCC investigators. The BISR will provide the infrastructure and consultation necessary for the use of computational tools and informatics databases in innovative ways. Specifically, the BISR has as its goals: 1. the advancement of bioinformatics and molecular biological information infrastructure; 2. the provision of leading-edge computational resources to enable solutions to important problems in molecular biology; 3. the education of researchers in bioinformatics; and 4. the assistance of researchers in the exploitation of high performance computing. The BISR is managed by a faculty director, Dr. C. Robertson McClung, and is overseen by an Internal Advisory Committee. The BISR is staffed by three consultants; two doctoral level and one masters level. The Resource staff are available for consultation on experimental design and data analysis. The BISR, in collaboration with Dartmouth Academic Computing, supports an extensive set of software applications that comprehensively address the needs of NCCC investigators in the analysis of organism-scale datasets in the areas of DNA sequence (genome), gene expression (transcriptome), protein expression (proteome), protein structural analysis (with an emphasis on NMR and crystallographic techniques), and small molecules (metabolome). This Resource also collaborates with the Molecular Biology & Proteomics Shared Service and the Microarray Shared Resource in providing seamless support for the investigator who is applying these tools to their research. The addition of these new resources is expected to significantly increase the user base of NCCC investigators.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Center Core Grants (P30)
Project #
5P30CA023108-28
Application #
7248003
Study Section
Subcommittee G - Education (NCI)
Project Start
Project End
Budget Start
2005-12-01
Budget End
2006-11-30
Support Year
28
Fiscal Year
2006
Total Cost
$23,606
Indirect Cost
Name
Dartmouth College
Department
Type
DUNS #
041027822
City
Hanover
State
NH
Country
United States
Zip Code
03755
Geller, Berta M; Frederick, Paul D; Knezevich, Stevan R et al. (2018) Pathologists' Use of Second Opinions in Interpretation of Melanocytic Cutaneous Lesions: Policies, Practices, and Perceptions. Dermatol Surg 44:177-185
Yeager, Mark P; Guyre, Cheryl A; Sites, Brian D et al. (2018) The Stress Hormone Cortisol Enhances Interferon-?-Mediated Proinflammatory Responses of Human Immune Cells. Anesth Analg 127:556-563
Courtney, Andrea L; Rapuano, Kristina M; Sargent, James D et al. (2018) Reward System Activation in Response to Alcohol Advertisements Predicts College Drinking. J Stud Alcohol Drugs 79:29-38
Aschbrenner, Kelly A; Bobak, Carly; Schneider, Emily J et al. (2018) Egocentric social networks and smoking among adults with serious mental illness. Transl Behav Med 8:531-539
Tapp, Stephanie J; Martin, Brook I; Tosteson, Tor D et al. (2018) Understanding the value of minimally invasive procedures for the treatment of lumbar spinal stenosis: the case of interspinous spacer devices. Spine J 18:584-592
Rodriguez-Garcia, Marta; Fortier, Jared M; Barr, Fiona D et al. (2018) Isolation of Dendritic Cells from the Human Female Reproductive Tract for Phenotypical and Functional Studies. J Vis Exp :
Shee, Kevin; Yang, Wei; Hinds, John W et al. (2018) Therapeutically targeting tumor microenvironment-mediated drug resistance in estrogen receptor-positive breast cancer. J Exp Med 215:895-910
Gareen, Ilana F; Black, William C; Tosteson, Tor D et al. (2018) Medical Care Costs Were Similar Across the Low-dose Computed Tomography and Chest X-Ray Arms of the National Lung Screening Trial Despite Different Rates of Significant Incidental Findings. Med Care 56:403-409
Kuklinski, Lawrence F; Yan, Shaofeng; Li, Zhongze et al. (2018) VISTA expression on tumor-infiltrating inflammatory cells in primary cutaneous melanoma correlates with poor disease-specific survival. Cancer Immunol Immunother 67:1113-1121
Ji, Xiangming; Niu, Xinnan; Qian, Jun et al. (2018) A Phenome-Wide Association Study Uncovers a Role for Autoimmunity in the Development of Chronic Obstructive Pulmonary Disease. Am J Respir Cell Mol Biol 58:777-779

Showing the most recent 10 out of 1911 publications