EXPOSURE BIOLOGY INFORMATICS CORE (EBIC): ABSTRACT The Exposure Biology Informatics Core (EBIC) is dedicated to providing informatics support to CEET investigators in the areas of chemoinformatics resource management and analysis, bioinformatics application development, multi-omics data management and integration, next-generation sequencing (NGS) data analysis, biomedical informatics to extract data from the Electronic Health Record (EHR), computer programming, artificial intelligence and machine learning, and data visualization. For this purpose, we have assembled a diverse team of experts with complementary skills in computer science, data science, and genomics to build a powerful informatics infrastructure that is prepared for biomedical and environmental big-data. The vision for EBIC is to provide seamless support for routine use of innovative computational methods that embrace the complexity of exposure biology and environmental health and enable the conversion of big-data into knowledge to advance Precision Public Health (PPH). A central goal of the EBIC is to work closely with CEET investigators in both a collaborative and support role to understand adverse outcome pathways (AOP) or constructs that go from the exposure to molecular initiating events to downstream key events to organism and population health outcomes. The primary objectives of the EBIC are organized around eight specific aims.
In Aim 1 : we will provide state-of-art informatics services to research groups that otherwise would not have access to these computational approaches.
In Aim 2 : We will support the CEET thematic areas in Air Pollution & Lung Health, Environmental Exposures & Cancer, Windows-of-Susceptibility, and Environmental Neuroscience with informatics services.
In Aim 3 : We will optimize EBIC services through prioritization.
In Aim 4 : We will support the CEET pilot projects with informatics services.
In Aim 5 : We will provide access to state-of-the-art computational equipment and software.
In Aim 6 : We will ensure that EBIC supports the activities of the Integrative Health Sciences Facility Core and the Translational Biomarker Core with informatics support for human subject/population research.
In Aim 7 : We will provide educational opportunities and training in informatics which is an optional experience for Early Stage Investigators.
In Aim 8 : We will disseminate informatics, data software and new tools to the larger environmental health sciences community .

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Center Core Grants (P30)
Project #
2P30ES013508-15
Application #
9917970
Study Section
Environmental Health Sciences Review Committee (EHS)
Project Start
Project End
Budget Start
2020-04-01
Budget End
2021-03-31
Support Year
15
Fiscal Year
2020
Total Cost
Indirect Cost
Name
University of Pennsylvania
Department
Type
DUNS #
042250712
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Blundell, Cassidy; Yi, Yoon-Suk; Ma, Lin et al. (2018) Placental Drug Transport-on-a-Chip: A Microengineered In Vitro Model of Transporter-Mediated Drug Efflux in the Human Placental Barrier. Adv Healthc Mater 7:
Xin, Frances; Fischer, Erin; Krapp, Christopher et al. (2018) Mice exposed to bisphenol A exhibit depressive-like behavior with neurotransmitter and neuroactive steroid dysfunction. Horm Behav 102:93-104
Knijnenburg, Theo A; Wang, Linghua; Zimmermann, Michael T et al. (2018) Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas. Cell Rep 23:239-254.e6
Chikara, Shireen; Mamidi, Sujan; Sreedasyam, Avinash et al. (2018) Flaxseed Consumption Inhibits Chemically Induced Lung Tumorigenesis and Modulates Expression of Phase II Enzymes and Inflammatory Cytokines in A/J Mice. Cancer Prev Res (Phila) 11:27-37
Whelan, Kelly A; Muir, Amanda B; Nakagawa, Hiroshi (2018) Esophageal 3D Culture Systems as Modeling Tools in Esophageal Epithelial Pathobiology and Personalized Medicine. Cell Mol Gastroenterol Hepatol 5:461-478
Winterbottom, Christopher J; Shah, Rupal J; Patterson, Karen C et al. (2018) Exposure to Ambient Particulate Matter Is Associated With Accelerated Functional Decline in Idiopathic Pulmonary Fibrosis. Chest 153:1221-1228
Shastri, Nishita; Tsai, Yu-Chen; Hile, Suzanne et al. (2018) Genome-wide Identification of Structure-Forming Repeats as Principal Sites of Fork Collapse upon ATR Inhibition. Mol Cell 72:222-238.e11
Friedman, Elliot S; Bittinger, Kyle; Esipova, Tatiana V et al. (2018) Microbes vs. chemistry in the origin of the anaerobic gut lumen. Proc Natl Acad Sci U S A 115:4170-4175
Sullivan, John; Croisant, Sharon; Howarth, Marilyn et al. (2018) Implications of the GC-HARMS Fishermen's Citizen Science Network: Issues Raised, Lessons Learned, and Next Steps for the Network and Citizen Science. New Solut :1048291118810871
Rashid, Cetewayo S; Bansal, Amita; Simmons, Rebecca A (2018) Oxidative Stress, Intrauterine Growth Restriction, and Developmental Programming of Type 2 Diabetes. Physiology (Bethesda) 33:348-359

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