? Functional Genomics Core A critical step in the discovery of disease-related genes is demonstrating the functional effects of putative disease-causing mutations. This is particularly challenging when the protein function is not known or a role for the protein in ocular tissues has not previously been established. Zebrafish (Danio rerio) are a cost-effective model organism to study functional effects of genomic variants. Zebrafish have a number of advantages over other genetic systems for the study of human development and disease and have been used to characterize the basis of many human genetic disorders. Compared with mice, zebrafish husbandry, breeding and genetic manipulation are more efficient and less expensive. The structure and function of the zebrafish eye is similar to humans and zebrafish have been used as an important model organism for the study of genetic and environmental eye diseases including those disorders investigated at the Massachusetts Eye and Ear (MEE). The purpose of the Functional Genomics core is to provide expert assistance using zebrafish as a model system to demonstrate functional effects of human disease-related gene variants and to model human inherited ocular disorders. This is a new core that is addressing a critical need for functional genomics for the vision investigators at MEE heavily engaged in disease gene discovery and characterization. The core will provide zebrafish husbandry and will assist investigators with project planning including morpholino design and design of guide RNAs for CRISPR/cas9 gene editing, training for zebrafish embryo injection and other manipulations and characterization of genetically modified fish.

Agency
National Institute of Health (NIH)
Institute
National Eye Institute (NEI)
Type
Center Core Grants (P30)
Project #
5P30EY014104-17
Application #
10017270
Study Section
Special Emphasis Panel (ZEY1)
Project Start
2002-09-01
Project End
2024-08-31
Budget Start
2020-09-01
Budget End
2021-08-31
Support Year
17
Fiscal Year
2020
Total Cost
Indirect Cost
Name
Massachusetts Eye and Ear Infirmary
Department
Type
DUNS #
073825945
City
Boston
State
MA
Country
United States
Zip Code
02114
Choi, Hee Joo; Wang, Rui; Jakobs, Tatjana C (2018) Single-Cell Dissociation and Characterization in the Murine Retina and Optic Nerve. Methods Mol Biol 1695:311-334
Paschalis, Eleftherios I; Lei, Fengyang; Zhou, Chengxin et al. (2018) Permanent neuroglial remodeling of the retina following infiltration of CSF1R inhibition-resistant peripheral monocytes. Proc Natl Acad Sci U S A 115:E11359-E11368
Iglesias, Adriana I; Mishra, Aniket; Vitart, Veronique et al. (2018) Cross-ancestry genome-wide association analysis of corneal thickness strengthens link between complex and Mendelian eye diseases. Nat Commun 9:1864
Chou, Jonathan C; Cousins, Clara C; Miller, John B et al. (2018) Fundus Densitometry Findings Suggest Optic Disc Hemorrhages in Primary Open-Angle Glaucoma Have an Arterial Origin. Am J Ophthalmol 187:108-116
Fan, Bao Jian; Chen, Xueli; Sondhi, Nisha et al. (2018) Family-Based Genome-Wide Association Study of South Indian Pedigrees Supports WNT7B as a Central Corneal Thickness Locus. Invest Ophthalmol Vis Sci 59:2495-2502
Okunuki, Yoko; Mukai, Ryo; Pearsall, Elizabeth A et al. (2018) Microglia inhibit photoreceptor cell death and regulate immune cell infiltration in response to retinal detachment. Proc Natl Acad Sci U S A 115:E6264-E6273
Cousins, Clara C; Chou, Jonathan C; Greenstein, Scott H et al. (2018) Resting nailfold capillary blood flow in primary open-angle glaucoma. Br J Ophthalmol :
Gupta, Priya R; Pendse, Nachiket; Greenwald, Scott H et al. (2018) Ift172 conditional knock-out mice exhibit rapid retinal degeneration and protein trafficking defects. Hum Mol Genet 27:2012-2024
Laíns, Inês; Kelly, Rachel S; Miller, John B et al. (2018) Human Plasma Metabolomics Study across All Stages of Age-Related Macular Degeneration Identifies Potential Lipid Biomarkers. Ophthalmology 125:245-254
Shiga, Yukihiro; Akiyama, Masato; Nishiguchi, Koji M et al. (2018) Genome-wide association study identifies seven novel susceptibility loci for primary open-angle glaucoma. Hum Mol Genet 27:1486-1496

Showing the most recent 10 out of 296 publications