- OVERALL The LONIR is focused on developing innovative solutions for the investigation of imaging, genetics, behavioral and clinical data. The LONIR structure is designed to facilitate studies of dynamically changing anatomic frameworks, e.g., developmental, neurodegenerative, traumatic, and metastatic, by providing methods for the comprehensive understanding of the nature and extent of these processes. Specifically, TR&D1 (Data Science) focuses on methodological developments for the management and informatics of brain and related data. This project will develop and issue new methods for robust scientific data management to create an environment where scientific analyses can be reproduced and/or enhanced, data can be easily discovered and reused, and analysis results can be visualized and made publicly searchable. TR&D2 (Diffusion MRI and Connectomics) seeks to advance the study of brain connectivity using diffusion imaging and its powerful extensions. This project will go beyond traditional tensor models of diffusion for assessing tissue and fiber microstructure and connectivity, develop tract-based statistical analysis tools using Deep Learning, introduce novel adaptive connectivity mapping approaches, using L1 fusion of multiple tractography methods, and provide mechanisms to study connectivity and diffusion imaging over 10,000 subjects. (This technology and these methods will be managed and executed by the TR&D1 framework to distributed datasets totaling over 10,000 subjects). Lastly, our TR&D3 (Intrinsic Surface Mapping) develops a general framework for surface mapping in the high dimensional Laplace-Beltrami embedding space via the mathematical optimization of their Riemannian metric. Our approach here overcomes fundamental limitations in existing methods based on spherical registration by eliminating the metric distortion during the parameterization step, thus achieving much improved accuracy in mapping brain anatomy. Coupled with a mature and efficient administrative structure and comprehensive training and dissemination, this program serves a wide and important need in the scientific community.

Public Health Relevance

- OVERALL The comprehensive suite of technologies include algorithmic and computational methods for image management, processing, data analysis and visualization. The technologies are ideally suited to enable holistic studies of the interactions between different imaging data modalities, phenotypic population characteristics, and physiological brain connectivity.

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Biotechnology Resource Grants (P41)
Project #
5P41EB015922-23
Application #
9922272
Study Section
Special Emphasis Panel (ZEB1)
Program Officer
Duan, Qi
Project Start
1998-09-30
Project End
2023-02-28
Budget Start
2020-03-01
Budget End
2021-02-28
Support Year
23
Fiscal Year
2020
Total Cost
Indirect Cost
Name
University of Southern California
Department
Ophthalmology
Type
Schools of Medicine
DUNS #
072933393
City
Los Angeles
State
CA
Country
United States
Zip Code
90089
Duncan, Dominique; Vespa, Paul; Pitkänen, Asla et al. (2018) Big data sharing and analysis to advance research in post-traumatic epilepsy. Neurobiol Dis :
Wang, Junyan; Aydogan, Dogu Baran; Varma, Rohit et al. (2018) Modeling topographic regularity in structural brain connectivity with application to tractogram filtering. Neuroimage 183:87-98
Aydogan, Dogu Baran; Shi, Yonggang (2018) Tracking and validation techniques for topographically organized tractography. Neuroimage 181:64-84
Kim, Hosung; Caldairou, Benoit; Bernasconi, Andrea et al. (2018) Multi-Template Mesiotemporal Lobe Segmentation: Effects of Surface and Volume Feature Modeling. Front Neuroinform 12:39
Duncan, Dominique; Vespa, Paul; Toga, Arthur W (2018) DETECTING FEATURES OF EPILEPTOGENESIS IN EEG AFTER TBI USING UNSUPERVISED DIFFUSION COMPONENT ANALYSIS. Discrete Continuous Dyn Syst Ser B 23:161-172
Azevedo, Christina J; Cen, Steven Y; Khadka, Sankalpa et al. (2018) Thalamic atrophy in multiple sclerosis: A magnetic resonance imaging marker of neurodegeneration throughout disease. Ann Neurol 83:223-234
Ning, Kaida; Chen, Bo; Sun, Fengzhu et al. (2018) Classifying Alzheimer's disease with brain imaging and genetic data using a neural network framework. Neurobiol Aging 68:151-158
Coletti, Amanda M; Singh, Deepinder; Kumar, Saurabh et al. (2018) Characterization of the ventricular-subventricular stem cell niche during human brain development. Development 145:
Aydogan, Dogu Baran; Jacobs, Russell; Dulawa, Stephanie et al. (2018) When tractography meets tracer injections: a systematic study of trends and variation sources of diffusion-based connectivity. Brain Struct Funct 223:2841-2858
Gahm, Jin Kyu; Shi, Yonggang; Alzheimer’s Disease Neuroimaging Initiative (2018) Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space. Med Image Anal 46:189-201

Showing the most recent 10 out of 273 publications