: Over the next five years the NIGMS P41 Proteomics Research Center for Integrative Biology Technology Research and Development (TR&D) efforts will focus on the needs of the biomedical research community in the context of Driving Biomedical Projects (DBPs) and collaborative projects that challenge the Center's technical capabilities. The three tightly integrated TR&Ds emphasize approaches for broadly characterizing proteins that include analysis of specific functions and activities, post-translational modifications, and other proteoforms; instrumental developments that enable more sensitive, quantitative, and high throughput proteomic measurements, including analyses of very small samples; and development of computational capabilities that provide improved quantitative proteomics measurements and facilitate proteomics data interpretation and subsequent integration with other data types, as well as their dissemination. The Center's technology developments will be evaluated in the context of a geographically diverse set of DBPs selected on the basis of their scientific and biomedical relevance, as well as their capacity to benefit from the Center's capabilities. These projects are essential to the Center, providing both direction for the early stage TR&D activities and test-beds for the developing technologies. The scope of the new DBP applications include the areas of protein quantification in signal transduction pathways, lipid-binding protein receptors, proteomic analysis of single pancreatic islets in diabetes, neuroproteomics, microbiome impact on lung transplant stability, oncogene regulation by PTMs, characterization of the intestinal host-pathogen interactome, embryonic survival and implantation, and functional annotation of drug resistant Mtb strains. In addition to these DBPs will be a host of new collaborative and service projects that benefit from distinct Center capabilities. The Center will train researchers in the ue of the adva

Public Health Relevance

Advances in instrumentation, experimental approaches, and methods for improving both data quality and integration, will lead to sensitive, quantitative measurements ofthe true proteome. Molecular insights on the nature and operation of cells, signaling pathways/networks, and other processes relevant to human health and disease state progression will be revealed. The Center serves the biomedical community by developing, integrating, and disseminating proteomic technologies for important biological applications.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Biotechnology Resource Grants (P41)
Project #
4P41GM103493-14
Application #
9068165
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Sheeley, Douglas
Project Start
2003-09-15
Project End
2018-05-31
Budget Start
2016-06-01
Budget End
2017-05-31
Support Year
14
Fiscal Year
2016
Total Cost
Indirect Cost
Name
Battelle Pacific Northwest Laboratories
Department
Type
DUNS #
032987476
City
Richland
State
WA
Country
United States
Zip Code
99352
Chouinard, Christopher D; Nagy, Gabe; Webb, Ian K et al. (2018) Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations. Anal Chem 90:11086-11091
Nagy, Gabe; Chouinard, Christopher D; Attah, Isaac K et al. (2018) Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations. Electrophoresis 39:3148-3155
Yu, Lei; Petyuk, Vladislav A; Gaiteri, Chris et al. (2018) Targeted brain proteomics uncover multiple pathways to Alzheimer's dementia. Ann Neurol 84:78-88
Wells, Alan; Wiley, H Steven (2018) A systems perspective of heterocellular signaling. Essays Biochem 62:607-617
Kedia, Komal; Wendler, Jason P; Baker, Erin S et al. (2018) Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis. Tuberculosis (Edinb) 112:52-61
Kramer, Philip A; Duan, Jicheng; Gaffrey, Matthew J et al. (2018) Fatiguing contractions increase protein S-glutathionylation occupancy in mouse skeletal muscle. Redox Biol 17:367-376
Zhu, Ying; Piehowski, Paul D; Zhao, Rui et al. (2018) Nanodroplet processing platform for deep and quantitative proteome profiling of 10-100 mammalian cells. Nat Commun 9:882
Sigdel, Tara K; Mercer, Neil; Nandoe, Sharvin et al. (2018) Urinary Virome Perturbations in Kidney Transplantation. Front Med (Lausanne) 5:72
Zheng, Xueyun; Dupuis, Kevin T; Aly, Noor A et al. (2018) Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites. Anal Chim Acta 1037:265-273
Zhu, Ying; Clair, Geremy; Chrisler, William B et al. (2018) Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC-MS. Angew Chem Int Ed Engl 57:12370-12374

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