Structural determination of paramagnetic proteins by solid state and solution NMR techniques is limited by severe line broadening due to the strong hyperfine interaction between the nuclei and the paramagnetic center. This prevents the use of standard NMR structural methods within a few angstroms of the metal center. In this context, high frequency (140 GHz) pulsed ENDOR techniques are ideally suited to extract hyperfine interactions in the vicinity of the paramagnetic center. We have been investigating a 2-Fe 2-S ferredoxin putidaredoxin (Pdx), where the metal center displays an effective spin S = 1/2 in the reduced form (Fe"""""""" - Fe"""""""") and the cluster is ligated by four cysteinyl sulfurs. We were able to record 140 GHz spin-echo detected spectra at low temperatures (10 K) with excellent signal-to-noise (> 50) and determine the g-anisotropy to g,, = 2.02 and g_L = 1.94. TI-relaxation of the Fe-cluster was measured between 9 and 40 K. We found short T,- values of 50 gs at 9 K and a more complex biexponential behavior between 15 - 40 K, likely due to the thermal population of higher excited spin states. A special ENDOR resonator for efficient irradiation of low-gamma nuclei was developed and preliminary """"""""C-Mims-ENDOR spectra were recorded at 10 K. In contrast to ENDOR data previously reported in the literature at low EPR frequencies (35 GHz), the ' 3C larmor frequency at 5 Tesla (53 MHz) is well separated from other nuclei and we observe symmetric ENDOR lineshapes around the larmor frequency. In a """"""""C uniformly labeled protein, two distinct hyperfine splitting have been observed, which we attribute to the cystein methylene groups. Further experiments with selectively labeled proteins are in progress and will permit unambiguous assignments of the observed hyperfine couplings.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR000995-26
Application #
6449603
Study Section
Project Start
2001-05-01
Project End
2002-04-30
Budget Start
Budget End
Support Year
26
Fiscal Year
2001
Total Cost
Indirect Cost
Name
Massachusetts Institute of Technology
Department
Type
DUNS #
City
Cambridge
State
MA
Country
United States
Zip Code
02139
Marintchev, Assen; Edmonds, Katherine A; Marintcheva, Boriana et al. (2009) Topology and regulation of the human eIF4A/4G/4H helicase complex in translation initiation. Cell 136:447-60
Frueh, Dominique P; Arthanari, Haribabu; Koglin, Alexander et al. (2009) A double TROSY hNCAnH experiment for efficient assignment of large and challenging proteins. J Am Chem Soc 131:12880-1
Frueh, Dominique P; Leed, Alison; Arthanari, Haribabu et al. (2009) Time-shared HSQC-NOESY for accurate distance constraints measured at high-field in (15)N-(13)C-ILV methyl labeled proteins. J Biomol NMR 45:311-8
Lentz, Margaret R; Westmoreland, Susan V; Lee, Vallent et al. (2008) Metabolic markers of neuronal injury correlate with SIV CNS disease severity and inoculum in the macaque model of neuroAIDS. Magn Reson Med 59:475-84
Hyberts, Sven G; Heffron, Gregory J; Tarragona, Nestor G et al. (2007) Ultrahigh-resolution (1)H-(13)C HSQC spectra of metabolite mixtures using nonlinear sampling and forward maximum entropy reconstruction. J Am Chem Soc 129:5108-16
Chen, Jingyang; Dupradeau, Francois-Yves; Case, David A et al. (2007) Nuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites. Biochemistry 46:3096-107
Lentz, Margaret R; Kim, John P; Westmoreland, Susan V et al. (2005) Quantitative neuropathologic correlates of changes in ratio of N-acetylaspartate to creatine in macaque brain. Radiology 235:461-8
Kim, John P; Lentz, Margaret R; Westmoreland, Susan V et al. (2005) Relationships between astrogliosis and 1H MR spectroscopic measures of brain choline/creatine and myo-inositol/creatine in a primate model. AJNR Am J Neuroradiol 26:752-9
Peled, S; Cory, D G; Raymond, S A et al. (1999) Water diffusion, T(2), and compartmentation in frog sciatic nerve. Magn Reson Med 42:911-8
Mo, H; Dai, Y; Pochapsky, S S et al. (1999) 1H, 13C and 15N NMR assignments for a carbon monoxide generating metalloenzyme from Klebsiella pneumoniae. J Biomol NMR 14:287-8

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