This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. The use of plant essential oils for a variety of medicinal application such as the prevention and treatment of infectious diseases and physiological disorders has been shown to be effective. Careful analyses of these plant essential oils has revealed that one of their active moieties seems to be related to sesquiterpenes and their derivatives, and research and discovery of these compounds for therapeutic applications are quickly becoming more attractive. It is, however, a well known fact that sesquiterpenes and their metabolites are usually poorly produced in a mixture of various isomers which are difficult to separate. In addition, chemical synthesis of these compounds is difficult due to their structural complexity and tends to result in a mixture of isomers. Enzyme dependent biosynthesis from a sesquiterpene precursor, farnesyl pyrophosphate, in genetically engineered E.coli may prove feasible as an alternative method of terpene production. Although it usually produces a single specific compound, the type of terpenes and the amount produced are limited by the number of genes cloned and the properties of those enzymes: expression, stability, and activity. It is usually difficult and time consuming to clone a desired gene responsible for particular sesquiterpene production. The technique called directed evolution has been applied for a decade to improve activity, stability and solubility of target enzymes, and alter their product specificity. We have shown in our previous work that (+)-delta- cadinene synthase was among the sesquiterpene synthase expressed well in E.coli. Therefore (+)-delta-cadinene synthase has been subjected to rounds of random muitagenesis and following saturation mutagenesis, and was successfully converted to germacrene-D-ol synthase with over 95% selectivity to it. Our project seeks to build structural models of both (+)-delta-cadinene synthase and germacrene-D-ol synthase, and thereby clarify the significant structual change within the enzyme that results in alteration of product specificity. This should also provide important information for the rational design of enzyme modifications to improve and diverse the enzyme function.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR001081-29
Application #
7367732
Study Section
Special Emphasis Panel (ZRG1-BBCA (01))
Project Start
2006-07-01
Project End
2007-06-30
Budget Start
2006-07-01
Budget End
2007-06-30
Support Year
29
Fiscal Year
2006
Total Cost
$7,655
Indirect Cost
Name
University of California San Francisco
Department
Pharmacology
Type
Schools of Pharmacy
DUNS #
094878337
City
San Francisco
State
CA
Country
United States
Zip Code
94143
Kozak, John J; Gray, Harry B; Garza-López, Roberto A (2018) Relaxation of structural constraints during Amicyanin unfolding. J Inorg Biochem 179:135-145
Alamo, Lorenzo; Pinto, Antonio; Sulbarán, Guidenn et al. (2018) Lessons from a tarantula: new insights into myosin interacting-heads motif evolution and its implications on disease. Biophys Rev 10:1465-1477
Viswanath, Shruthi; Chemmama, Ilan E; Cimermancic, Peter et al. (2017) Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures. Biophys J 113:2344-2353
Chu, Shidong; Zhou, Guangyan; Gochin, Miriam (2017) Evaluation of ligand-based NMR screening methods to characterize small molecule binding to HIV-1 glycoprotein-41. Org Biomol Chem 15:5210-5219
Portioli, Corinne; Bovi, Michele; Benati, Donatella et al. (2017) Novel functionalization strategies of polymeric nanoparticles as carriers for brain medications. J Biomed Mater Res A 105:847-858
Alamo, Lorenzo; Koubassova, Natalia; Pinto, Antonio et al. (2017) Lessons from a tarantula: new insights into muscle thick filament and myosin interacting-heads motif structure and function. Biophys Rev 9:461-480
Nguyen, Hai Dang; Yadav, Tribhuwan; Giri, Sumanprava et al. (2017) Functions of Replication Protein A as a Sensor of R Loops and a Regulator of RNaseH1. Mol Cell 65:832-847.e4
Sofiyev, Vladimir; Kaur, Hardeep; Snyder, Beth A et al. (2017) Enhanced potency of bivalent small molecule gp41 inhibitors. Bioorg Med Chem 25:408-420
Grant, Oliver C; Tessier, Matthew B; Meche, Lawrence et al. (2016) Combining 3D structure with glycan array data provides insight into the origin of glycan specificity. Glycobiology 26:772-783
Bowen, Alice M; Jones, Michael W; Lovett, Janet E et al. (2016) Exploiting orientation-selective DEER: determining molecular structure in systems containing Cu(ii) centres. Phys Chem Chem Phys 18:5981-94

Showing the most recent 10 out of 508 publications