This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. Ribonucleotide reductases (RNR) are essential to cellular organisms. They reduce ribonucleotides to deoxyribonucleotides and provide the building blocks of deoxyribonucleic acids (DNA). RNRs are divided into three different classes based on the mechanism they use for ribonucleotide reduction. Much research has been done on class I RNRs which include ribonucleotide reductase from humans and E. coli. Originally all class I RNRs were believed to utilize a diiron center and an ?essential? tyrosine radical to initiate proton coupled electron transfer. The proton coupled electron transfer generates a cysteine radical in R1 to begin ribonucleotide reduction. However, the human pathogen Chlamydia trachomatis (Ct) lacked the ?essential? tyrosine and had a phenylalanine in its place. It was later discovered by Jiang et al. that the R2 subunit of RNR from Ct featured a manganese and an iron instead of a diiron center and a tyrosine. In Ct R2 the heterobinuclear center starts as a Mn(II)/Fe(II) which is oxidized by molecular oxygen (O2) to the Mn(IV)/Fe(IV) intermediate. This intermediate is then reduced by one electron to form the active Mn(IV)/Fe(III) state. The Mn(IV)/Fe(III) cluster can initiate the proton coupled electron transfer to form the cysteine radical in R1 reducing the heterobinuclear center to the Mn(III)/Fe(III) state. The Mn(III)/Fe(III) state can be regenerated to the Mn(IV)/Fe(III) state for further catalysis. In a previous publication we (Younker et al.) utilized the heterobinuclear center of Ct R2 and characterized the structure of the Mn(IV)/Fe(III) cofactor utilizing extended x-ray absorption fine structure (EXAFS) from both the Mn and Fe sides and density functional theory (DFT) calculations. We now wish to utilize these same techniques to structurally characterize the Mn(IV)/Fe(IV) intermediate.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
2P41RR001209-31
Application #
8170245
Study Section
Special Emphasis Panel (ZRG1-BCMB-P (40))
Project Start
2010-05-01
Project End
2011-02-28
Budget Start
2010-05-01
Budget End
2011-02-28
Support Year
31
Fiscal Year
2010
Total Cost
$346
Indirect Cost
Name
Stanford University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
009214214
City
Stanford
State
CA
Country
United States
Zip Code
94305
Aleman, Fernando; Tzarum, Netanel; Kong, Leopold et al. (2018) Immunogenetic and structural analysis of a class of HCV broadly neutralizing antibodies and their precursors. Proc Natl Acad Sci U S A 115:7569-7574
Herrera, Nadia; Maksaev, Grigory; Haswell, Elizabeth S et al. (2018) Elucidating a role for the cytoplasmic domain in the Mycobacterium tuberculosis mechanosensitive channel of large conductance. Sci Rep 8:14566
Lal, Neeraj K; Nagalakshmi, Ugrappa; Hurlburt, Nicholas K et al. (2018) The Receptor-like Cytoplasmic Kinase BIK1 Localizes to the Nucleus and Regulates Defense Hormone Expression during Plant Innate Immunity. Cell Host Microbe 23:485-497.e5
Pluvinage, Benjamin; Grondin, Julie M; Amundsen, Carolyn et al. (2018) Molecular basis of an agarose metabolic pathway acquired by a human intestinal symbiont. Nat Commun 9:1043
Beyerlein, Kenneth R; Jönsson, H Olof; Alonso-Mori, Roberto et al. (2018) Ultrafast nonthermal heating of water initiated by an X-ray Free-Electron Laser. Proc Natl Acad Sci U S A 115:5652-5657
Yoshizawa, Takuya; Ali, Rustam; Jiou, Jenny et al. (2018) Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites. Cell 173:693-705.e22
Vickers, Chelsea; Liu, Feng; Abe, Kento et al. (2018) Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to ?-l-fucosidases from GH29. J Biol Chem 293:18296-18308
Nguyen, Phong T; Lai, Jeffrey Y; Lee, Allen T et al. (2018) Noncanonical role for the binding protein in substrate uptake by the MetNI methionine ATP Binding Cassette (ABC) transporter. Proc Natl Acad Sci U S A 115:E10596-E10604
Dods, Robert; Båth, Petra; Arnlund, David et al. (2017) From Macrocrystals to Microcrystals: A Strategy for Membrane Protein Serial Crystallography. Structure 25:1461-1468.e2
de Vries, Robert P; Tzarum, Netanel; Peng, Wenjie et al. (2017) A single mutation in Taiwanese H6N1 influenza hemagglutinin switches binding to human-type receptors. EMBO Mol Med 9:1314-1325

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