Dr. Steven Almo, an expert in x-ray crystallography, has spearheaded an exciting collaborative effort in conjunction with Dr. Zhong-Yin Zhang, an enzymologist, and Dr. David Lawrence, a synthetic chemist in order to design potential theraputic agents for and understand the structures of protein tyrosine phosphatases. This effort has been made possible using crystal diffraction data collected at beamline X9B of the Resource. Data collected on rotating anode diffractometers at AECOM have provided data with insufficient resolution to adequately define the strutucre of the enzyme complexed with ligands. Using synchrotron methods, Dr. Almo's group has recently solved the structure of a mutant tyrosine phosphatase complexed with several synthetic non-peptide substrates to better than 2.0 ? resolution. A structure based on the active site mutant, where a cystine amino acid side chain was replaced with a serine side chain (essentially a substitution of oxygen for sulfur in the structures) was also solved to 3.0 ? resolution. The inactive mutant is important, because it can be examined in the presence of substrates, since they are not cleaved. Interestingly, and of functional significance, is the fact that the diffraction pattern improved for crystals where substrate is bound, indicating a 'tightening up"""""""" of the overall structure. One of these inhibitors was found to possess a second, novel binding mode, which may provide additional information for the design of tight-binding inhibitors specific to the phosphatase. These protein tyrosine phosphatases constitute a class of enzymes whose roles in oncogenesis and signal transduction are of significance; consequently, it will be crucial to understand the structural basis of their specificity to rationally design therapeutic agents to control cell growth and signalling.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR001633-14
Application #
5223463
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
14
Fiscal Year
1996
Total Cost
Indirect Cost
Vongsvivut, Jitraporn; Fernandez, Jason; Ekgasit, Sanong et al. (2004) Characterization of supported cylinder-planar germanium waveguide sensors with synchrotron infrared radiation. Appl Spectrosc 58:143-51
Masip, Lluis; Pan, Jonathan L; Haldar, Suranjana et al. (2004) An engineered pathway for the formation of protein disulfide bonds. Science 303:1185-9
Huang, Raymond Y; Miller, Lisa M; Carlson, Cathy S et al. (2003) In situ chemistry of osteoporosis revealed by synchrotron infrared microspectroscopy. Bone 33:514-21
Rashidzadeh, Hassan; Khrapunov, Sergei; Chance, Mark R et al. (2003) Solution structure and interdomain interactions of the Saccharomyces cerevisiae ""TATA binding protein"" (TBP) probed by radiolytic protein footprinting. Biochemistry 42:3655-65
Uchida, Takeshi; Takamoto, Keiji; He, Qin et al. (2003) Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme. J Mol Biol 328:463-78
Taylor, Colleen M; Watton, Stephen P; Bryngelson, Peter A et al. (2003) Inner-sphere complexation of cobalt(II) 2,9-dimethyl-1,10-phenanthroline ([Co(neo)]2+) with commercial and sol-gel derived silica gel surfaces. Inorg Chem 42:312-20
Dewan, John C; Feeling-Taylor, Angela; Puius, Yoram A et al. (2002) Structure of mutant human carbonmonoxyhemoglobin C (betaE6K) at 2.0 A resolution. Acta Crystallogr D Biol Crystallogr 58:2038-42
Kiselar, J G; Maleknia, S D; Sullivan, M et al. (2002) Hydroxyl radical probe of protein surfaces using synchrotron X-ray radiolysis and mass spectrometry. Int J Radiat Biol 78:101-14
Swisher, Jennifer F; Su, Linhui J; Brenowitz, Michael et al. (2002) Productive folding to the native state by a group II intron ribozyme. J Mol Biol 315:297-310
Dhavan, Gauri M; Crothers, Donald M; Chance, Mark R et al. (2002) Concerted binding and bending of DNA by Escherichia coli integration host factor. J Mol Biol 315:1027-37

Showing the most recent 10 out of 68 publications