We have made two trips to the Cornell High Energy Synchrotron within the last year and a half. Our goals for these trips were threefold : (1) To establish the limit of diffraction of the IgE receptor (FceRIa) crystals (2) To collect a native data set to the highest resolution possible and (3) to collect potential heavy atom derivative data sets for isomorphous replacement. We have made substantial progress for each of these goals. The FceRIa crystals belong to spacegroup P41 or P43 (cell dimensions 145 x 145 x 63_) and diffract X-rays weakly. The c-axis of the crystals can vary from 62_ to 72_, necessitating the collection of multiple native and derivative data sets. We have collected three native data sets at CHESS, two to a resolution of 4.0 -4.5 _, and one to a resolution limit of 3.7 _. For comparison, the diffraction limit using a laboratory X-ray source is lower than 6 _. We expect 2-3 receptor molecules per asymmetric unit and therefore non-crystallographic symmetry averaging should improve the electron density maps at 3.7 _. We continue to improve the FceRIa crystals and data collection strategies in order to extend the data to higher resolution. Finally, we have collected two potential heavy atom derivative data sets for these crystals. Both compounds have shown significant intensity differences in initial screening carried out at the NSLS X-25 beamline, but these crystals also suffered from significant non-isomorphism along the c-axis. We have collected full new data sets at CHESS, which have cell dimensions within 1 - 1.5% of the 3.7_ native data. Initial results from one of these potential derivatives gives mean fractional isomorphous differences of 16% compared to the native and the interpretation of difference patterson maps is underway.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR001646-14
Application #
5223542
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
14
Fiscal Year
1996
Total Cost
Indirect Cost
Kozlov, Guennadi; Wong, Kathy; Gehring, Kalle (2018) Crystal structure of the Legionella effector Lem22. Proteins 86:263-267
Ménade, Marie; Kozlov, Guennadi; Trempe, Jean-François et al. (2018) Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J Biol Chem 293:12832-12842
Xu, Jie; Kozlov, Guennadi; McPherson, Peter S et al. (2018) A PH-like domain of the Rab12 guanine nucleotide exchange factor DENND3 binds actin and is required for autophagy. J Biol Chem 293:4566-4574
Dean, Dexter N; Rana, Pratip; Campbell, Ryan P et al. (2018) Propagation of an A? Dodecamer Strain Involves a Three-Step Mechanism and a Key Intermediate. Biophys J 114:539-549
Chen, Yu Seby; Kozlov, Guennadi; Fakih, Rayan et al. (2018) The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+ efflux activity. J Biol Chem 293:19998-20007
Cogliati, Massimo; Zani, Alberto; Rickerts, Volker et al. (2016) Multilocus sequence typing analysis reveals that Cryptococcus neoformans var. neoformans is a recombinant population. Fungal Genet Biol 87:22-9
Oot, Rebecca A; Kane, Patricia M; Berry, Edward A et al. (2016) Crystal structure of yeast V1-ATPase in the autoinhibited state. EMBO J 35:1694-706
Lucido, Michael J; Orlando, Benjamin J; Vecchio, Alex J et al. (2016) Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry. Biochemistry 55:1226-38
Bauman, Joseph D; Harrison, Jerry Joe E K; Arnold, Eddy (2016) Rapid experimental SAD phasing and hot-spot identification with halogenated fragments. IUCrJ 3:51-60
Xu, Caishuang; Kozlov, Guennadi; Wong, Kathy et al. (2016) Crystal Structure of the Salmonella Typhimurium Effector GtgE. PLoS One 11:e0166643

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