One of our major recent achievements has been the successful solution and refinement of the structure of the Lansing strain of poliovirus type 2 in complex with antiviral agent SCH48973 at 2.9 ? resolution (Lentz et al., Structure, 5:961-978, 1997) using data collected at CHESS. Since the structures of poliovirus 1 Mahoney and poliovirus 3 Sabin were previously solved by Dr. James Hogle, this has permitted a comparison of the structures of all serotypes of a picornavirus for the first time. The structure of poliovirus 2 Lansing has revealed a wealth of information about features such as capsid stability, host range specificity, antiviral agent binding, and poliovirus capsid assembly and disassembly. We have also been able to solve numerous additional important structures of HIV-1 RT using data collected at CHESS. These include structures of: 1) mutants of HIV-1 RT that are resistant to both nucleoside and nonnucleoside inhibitors; 2) HIV-1 RT complexed with nonnucleoside inhibitors from Janssen, Hoechst and NIH; and 3) a complex of HIV-1 RT with bound RNA/DNA. We have also made important preliminary progress in determining the structure of a ternary complex of HIV-1 RT with bound template-primer and AZT- and PMEA-triphosphate. The HIV-1 RT structural work has continued to spawn additional publications relating to drug resistance, polymerization mechanisms, and general polymerase structure and function (for detailed list see below). The structures of the Met184Ile (in complex with dsDNA), Lys103Asn (with and without bound inhibitors), and Tyr188Leu (with bound HBY 097) mutants of HIV-1 RT have been solved. This work is illuminating the structural basis of HIV-1 RT drug resistance for the first time, and the results from each of the studies point to diverse mechanisms for how the enzyme loses sensitivity to important drugs used in the treatment of AIDS. Highlights include: 1) a large movement of the template-primer in the Met184Ile mutant relative to its position in the wild-type RT/DNA complex and a structural explanation for high-level resistance against 3TC; and 2) a novel mechanism of drug resistance for the Lys103Asn mutant that is resistant to nonnucleoside inhibitors: the unbound enzyme has a rearranged structure of the inhibitor-binding region whereas the bound complexes are very similar to the wild-type complexes. The outstanding leadership and facilities at CHESS have made it possible for us to carry out these determinations which would otherwise have been unfeasible.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR001646-19
Application #
6491095
Study Section
Project Start
2001-08-15
Project End
2002-08-14
Budget Start
Budget End
Support Year
19
Fiscal Year
2001
Total Cost
$142,703
Indirect Cost
Name
Cornell University
Department
Type
DUNS #
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Chen, Yu Seby; Kozlov, Guennadi; Fakih, Rayan et al. (2018) The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+ efflux activity. J Biol Chem 293:19998-20007
Kozlov, Guennadi; Wong, Kathy; Gehring, Kalle (2018) Crystal structure of the Legionella effector Lem22. Proteins 86:263-267
Ménade, Marie; Kozlov, Guennadi; Trempe, Jean-François et al. (2018) Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J Biol Chem 293:12832-12842
Xu, Jie; Kozlov, Guennadi; McPherson, Peter S et al. (2018) A PH-like domain of the Rab12 guanine nucleotide exchange factor DENND3 binds actin and is required for autophagy. J Biol Chem 293:4566-4574
Dean, Dexter N; Rana, Pratip; Campbell, Ryan P et al. (2018) Propagation of an A? Dodecamer Strain Involves a Three-Step Mechanism and a Key Intermediate. Biophys J 114:539-549
Xu, Caishuang; Kozlov, Guennadi; Wong, Kathy et al. (2016) Crystal Structure of the Salmonella Typhimurium Effector GtgE. PLoS One 11:e0166643
Cogliati, Massimo; Zani, Alberto; Rickerts, Volker et al. (2016) Multilocus sequence typing analysis reveals that Cryptococcus neoformans var. neoformans is a recombinant population. Fungal Genet Biol 87:22-9
Oot, Rebecca A; Kane, Patricia M; Berry, Edward A et al. (2016) Crystal structure of yeast V1-ATPase in the autoinhibited state. EMBO J 35:1694-706
Lucido, Michael J; Orlando, Benjamin J; Vecchio, Alex J et al. (2016) Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry. Biochemistry 55:1226-38
Bauman, Joseph D; Harrison, Jerry Joe E K; Arnold, Eddy (2016) Rapid experimental SAD phasing and hot-spot identification with halogenated fragments. IUCrJ 3:51-60

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