This subproject is one of many research subprojects utilizing theresources provided by a Center grant funded by NIH/NCRR. The subproject andinvestigator (PI) may have received primary funding from another NIH source,and thus could be represented in other CRISP entries. The institution listed isfor the Center, which is not necessarily the institution for the investigator.A central goal of our program is to understand how protein structure controls long-range electron transfer (ET) reactions. Three systems were studied this past year - 1) Interprotein ET in complexes of cytochrome c (Cc) with cytochrome c peroxidase (CcP) and 2) Inter- and intra protein ET reactions in metal-modified azurins (Az) 3) Inter-cofactor ET in prolyl 4-hydroxylase (P4H).1)CcP:Cc - We determined structures of Zn-porphyrin containing CcP with Cc from yeast (yCc) and Cc from horse heart (hCc). YCc and hCc have different modes of interaction with CcP. Electron transfer rates measured directly in these crystals confirm for the first time that the crystal structures represent associations that govern solution reactivity. Moreover ET rate calculations based these new structures indicate that the observed reactivity can only be rationalized if conformational change gates ET. We have also collected diffraction data on complexes that contain site-directed mutants of Cc that drastically alter electron transfer reactivity.2) Az - We determined the high resolution structure of a Re-modified azurin in which a very stable tryptophan radical forms by photochemically triggered oxidative electron transfer to the Re. Surprisingly, the Trp site of the stable radical is solvent exposed and the Trp indole is found in multiple conformations. We have also determined an atomic resolution structure (0.98 resolution) of a Cu and Zn-containing azurin. These are the first atomic resolution structures of a blue-copper protein.3) P4H - We have progressed towards determining the first structure for a collegen-type P4H, an enzyme where inter-cofactor ET rescues oxidatively trapped states. We have now collected diffraction data on three different crystal forms and have improved our native data to 2.4 resolution. We have collected anomalous scattering data from Pb and W derivatives and have an interpretable electron density map. Structure determination is underway.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
2P41RR001646-26
Application #
7721288
Study Section
Special Emphasis Panel (ZRG1-BCMB-E (40))
Project Start
2008-08-01
Project End
2009-06-30
Budget Start
2008-08-01
Budget End
2009-06-30
Support Year
26
Fiscal Year
2008
Total Cost
$100,583
Indirect Cost
Name
Cornell University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
872612445
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Kozlov, Guennadi; Wong, Kathy; Gehring, Kalle (2018) Crystal structure of the Legionella effector Lem22. Proteins 86:263-267
Ménade, Marie; Kozlov, Guennadi; Trempe, Jean-François et al. (2018) Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J Biol Chem 293:12832-12842
Xu, Jie; Kozlov, Guennadi; McPherson, Peter S et al. (2018) A PH-like domain of the Rab12 guanine nucleotide exchange factor DENND3 binds actin and is required for autophagy. J Biol Chem 293:4566-4574
Dean, Dexter N; Rana, Pratip; Campbell, Ryan P et al. (2018) Propagation of an A? Dodecamer Strain Involves a Three-Step Mechanism and a Key Intermediate. Biophys J 114:539-549
Chen, Yu Seby; Kozlov, Guennadi; Fakih, Rayan et al. (2018) The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+ efflux activity. J Biol Chem 293:19998-20007
Lucido, Michael J; Orlando, Benjamin J; Vecchio, Alex J et al. (2016) Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry. Biochemistry 55:1226-38
Bauman, Joseph D; Harrison, Jerry Joe E K; Arnold, Eddy (2016) Rapid experimental SAD phasing and hot-spot identification with halogenated fragments. IUCrJ 3:51-60
Xu, Caishuang; Kozlov, Guennadi; Wong, Kathy et al. (2016) Crystal Structure of the Salmonella Typhimurium Effector GtgE. PLoS One 11:e0166643
Cogliati, Massimo; Zani, Alberto; Rickerts, Volker et al. (2016) Multilocus sequence typing analysis reveals that Cryptococcus neoformans var. neoformans is a recombinant population. Fungal Genet Biol 87:22-9
Oot, Rebecca A; Kane, Patricia M; Berry, Edward A et al. (2016) Crystal structure of yeast V1-ATPase in the autoinhibited state. EMBO J 35:1694-706

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