This subproject is one of many research subprojects utilizing theresources provided by a Center grant funded by NIH/NCRR. The subproject andinvestigator (PI) may have received primary funding from another NIH source,and thus could be represented in other CRISP entries. The institution listed isfor the Center, which is not necessarily the institution for the investigator.Specimen-1 Autosomal dominant polycystic kidney disease (ADPKD or PKD) is the most common, monogenic cause of kidney failure in humans occurring in 1:1000 live births. It affects about 500,000 people in the United States and 4 to 6 million worldwide. PKD is caused by mutations in either of two genes, PKD1 and PKD2, with virtually the same clinical manifestations: the presence of hundreds of fluid filled cysts in kidneys, liver, pancreas and intestines. Renal cysts can grow up to 20 cm in size, causing gross enlargement of both kidneys and ultimately leading to end-stage renal failure. PKD is a systematic disorder often involving hypertension, mitral valve prolapse, intracranial aneurisms, hematuria, polyuria, predispostion to kidney stones, and urinary tract infections. The molecular mechanisms underlying PKD are unknown despite identification of the genes and mutations involved. PKD1 and PKD2, encode for the proteins, polycystin-1 (PC1) and polycystin-2 (PC2), respectively. PC1 is a large transmembrane protein possibly involved in cell-matrix and/or cell-cell interactions, while PC2 is a calcium (Ca2+) permeable cation channel of the transient receptor potential (TRP) family. There have to date been no crystal structures solved for either of these proteins. We will determine the structure of portions of these proteins to move towards a more complete understanding of the molecular basis for polycystic kidney disease. We are able to reproducibly grow three-dimensional crystals and have determined cryoprotectant conditions. At the home source our crystals have not diffracted, therefore, synchrotron data collection is important for these crystals. Specimen-2 Proper function of cytokine signaling pathways is critical for immunoregulation, hematopoiesis, and cytokine-directed inflammation and growth. Most signals from type I and type II cytokines are mediated by the Janus kinase (Jak) family of non-receptor tyrosine kinases. Our plan is to discover the molecular basis for cytoplasmic signal transduction from the interleukin-2 family cytokines through Jak3. We will use structural biology to provide the first description of Jak interactions with cytokine receptor cytoplasmic tails, to investigate Jak kinase domain specificity, regulation and inhibition, and to describe the role of the FERM domain in kinase activation. The Jak kinases (Janus) are dysregulated in multiple leukemias and lymphomas by point mutations and gene translocations (e.g. Tel-Jak2). They have also recently been shown to play an important, and perhaps critical, role in the acquisition of classical myeloproliferative disorders. Jak kinases are additionally abnormally activated by oncogenic tyrosine kinases (e.g. Bcr-Abl in chronic myelogenous leukemia) and by increased cytokine expression in certain malignancies (e.g. interleukin-6 overexpression in myeloma increases Jak activity). As these aberrant activations of Jak kinases are important steps in the propagation of deleterious signaling cascades there is potential for Jak-specific inhibitors to treat multiple cancers and other disorders. I solved the crystal structure of the kinase domain of Jak3, this was the first example of a crystal structure for any domain of any member of the Jak family. We are continuing this work by focusing on two areas, the determination of crystal structures of other domains of the Jak kinases and the determination of further kinase domain crystal structures. We are able to reproducibly grow three-dimensional crystals and have determined cryoprotectant conditions. At the home source our crystals have yielded diffraction to approximately 2.7 resolution. We would like to increase the resolution of these diffraction data.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
2P41RR001646-26
Application #
7721315
Study Section
Special Emphasis Panel (ZRG1-BCMB-E (40))
Project Start
2008-08-01
Project End
2009-06-30
Budget Start
2008-08-01
Budget End
2009-06-30
Support Year
26
Fiscal Year
2008
Total Cost
$12,177
Indirect Cost
Name
Cornell University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
872612445
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Kozlov, Guennadi; Wong, Kathy; Gehring, Kalle (2018) Crystal structure of the Legionella effector Lem22. Proteins 86:263-267
Ménade, Marie; Kozlov, Guennadi; Trempe, Jean-François et al. (2018) Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J Biol Chem 293:12832-12842
Xu, Jie; Kozlov, Guennadi; McPherson, Peter S et al. (2018) A PH-like domain of the Rab12 guanine nucleotide exchange factor DENND3 binds actin and is required for autophagy. J Biol Chem 293:4566-4574
Dean, Dexter N; Rana, Pratip; Campbell, Ryan P et al. (2018) Propagation of an A? Dodecamer Strain Involves a Three-Step Mechanism and a Key Intermediate. Biophys J 114:539-549
Chen, Yu Seby; Kozlov, Guennadi; Fakih, Rayan et al. (2018) The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+ efflux activity. J Biol Chem 293:19998-20007
Xu, Caishuang; Kozlov, Guennadi; Wong, Kathy et al. (2016) Crystal Structure of the Salmonella Typhimurium Effector GtgE. PLoS One 11:e0166643
Cogliati, Massimo; Zani, Alberto; Rickerts, Volker et al. (2016) Multilocus sequence typing analysis reveals that Cryptococcus neoformans var. neoformans is a recombinant population. Fungal Genet Biol 87:22-9
Oot, Rebecca A; Kane, Patricia M; Berry, Edward A et al. (2016) Crystal structure of yeast V1-ATPase in the autoinhibited state. EMBO J 35:1694-706
Lucido, Michael J; Orlando, Benjamin J; Vecchio, Alex J et al. (2016) Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry. Biochemistry 55:1226-38
Bauman, Joseph D; Harrison, Jerry Joe E K; Arnold, Eddy (2016) Rapid experimental SAD phasing and hot-spot identification with halogenated fragments. IUCrJ 3:51-60

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