This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. We will try to address two questions: 1. Is there any difference in damage versus dose to protein crystals when data is collected at T=100 K (nitrogen gas) and T=20 K (helium gas)? Several experiments have seen little or no effect, but the effects may be too small to be reliably quantified using standard methods. Postdoctoral Associate (now Assistant Professor) Jan Kmetko developed a data collection and analysis protocol that should give the accuracy to reliably resolve differences. In this part of the experiment, we will dose crystals and collect data in a narrow angular wedge (5 degrees), which will not be sufficient for a full structural refinement, out to doses of 20 MGray or more. 2. Does site-specific radiation damage depend on temperature at temperatures well below water's glass transition temperature? There is a belief among those currently studying radiation damage to protein crystals that the observation of site-specific damage (e.g., breakage of disulfide bonds) at relatively low doses is evidence for secondary radiation damage. However, we believe (based on old ESR experiments and basic considerations) that this damage occurs via electron transfer, not by thermal diffusion of atomic and molecular radicals, and therefore is primary damage. Even if site specific damage is due entirely to electron motion, this motion may occur via tunneling or thermal hopping. By comparing site-specific damage to protein crystals at T=100 K and T=20 K, we hope to be able to nail down the nature of site-specific damage. These experiments will involve taking a series of data sets (each with enough information to evalate the status of disulfide bonds) from the same spot on the same crystal , and watching the growth of site specific damage with total absorbed dose. Comparison of data collected at T=100 K and T=20 K will reveal any differences in the rate and extent of site specific damage.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR001646-28
Application #
8171497
Study Section
Special Emphasis Panel (ZRG1-BCMB-E (40))
Project Start
2010-07-01
Project End
2011-06-30
Budget Start
2010-07-01
Budget End
2011-06-30
Support Year
28
Fiscal Year
2010
Total Cost
$24,068
Indirect Cost
Name
Cornell University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
872612445
City
Ithaca
State
NY
Country
United States
Zip Code
14850
Kozlov, Guennadi; Wong, Kathy; Gehring, Kalle (2018) Crystal structure of the Legionella effector Lem22. Proteins 86:263-267
Ménade, Marie; Kozlov, Guennadi; Trempe, Jean-François et al. (2018) Structures of ubiquitin-like (Ubl) and Hsp90-like domains of sacsin provide insight into pathological mutations. J Biol Chem 293:12832-12842
Xu, Jie; Kozlov, Guennadi; McPherson, Peter S et al. (2018) A PH-like domain of the Rab12 guanine nucleotide exchange factor DENND3 binds actin and is required for autophagy. J Biol Chem 293:4566-4574
Dean, Dexter N; Rana, Pratip; Campbell, Ryan P et al. (2018) Propagation of an A? Dodecamer Strain Involves a Three-Step Mechanism and a Key Intermediate. Biophys J 114:539-549
Chen, Yu Seby; Kozlov, Guennadi; Fakih, Rayan et al. (2018) The cyclic nucleotide-binding homology domain of the integral membrane protein CNNM mediates dimerization and is required for Mg2+ efflux activity. J Biol Chem 293:19998-20007
Lucido, Michael J; Orlando, Benjamin J; Vecchio, Alex J et al. (2016) Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry. Biochemistry 55:1226-38
Bauman, Joseph D; Harrison, Jerry Joe E K; Arnold, Eddy (2016) Rapid experimental SAD phasing and hot-spot identification with halogenated fragments. IUCrJ 3:51-60
Xu, Caishuang; Kozlov, Guennadi; Wong, Kathy et al. (2016) Crystal Structure of the Salmonella Typhimurium Effector GtgE. PLoS One 11:e0166643
Cogliati, Massimo; Zani, Alberto; Rickerts, Volker et al. (2016) Multilocus sequence typing analysis reveals that Cryptococcus neoformans var. neoformans is a recombinant population. Fungal Genet Biol 87:22-9
Oot, Rebecca A; Kane, Patricia M; Berry, Edward A et al. (2016) Crystal structure of yeast V1-ATPase in the autoinhibited state. EMBO J 35:1694-706

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