Two software packages have been developed and distributed LYSIS and ADAPT. Both software packages are continuously expanded to incorporate new methodologies developed in Core Projects #1, #2 and #5. LYSIS is an interactive modular software package of programs performing high-level tasks that can be used for linear and nonlinear time-series analysis, and system modeling and simulation. The latest Version 6.2 includes the """"""""principal dynamic mode"""""""" analysis technique and a novel class of """"""""artificial neural networks"""""""", both developed in Core Project #1. These programs are unique to LYSIS and enhance significantly the data analysis capabilities in many biomedical applications. In addition, the unique LYSIS programs of Volterra kernel estimation were converted into MatLab toolset in order to promote their broader use among the peer community. During the past grant year we have continued the distribution and support Release 4 of ADAPT. Release 4 includes: extensive Model File Library containing important pharmacokinetic and pharmacodynamic models; complete error analysis for the maximum likelihood estimator in ID; information criteria for model selection with each estimator; expanded predictive statistics and residual analysis; user defined secondary parameter models; partially optimized sample schedules for adaptive trial designs; automated multiple subject parameter estimation. Release 4 is supported for the following hardware/software platforms: PC/Windows 95/NT (Digital Visual Fortran v. 5.0); PC/Windows 3.1 (DOS) (Microsoft PowerStation Fortran v 1.0); SUN/Solaris; VAX/OpenVMS; HP/HP-UX (available upon request). The User's Guide for Release 4 includes a tutorial introduction to modeling with ADAPT. Also, an extensive Model Library is available that includes over 35 pharmacokinetic and pharmacokinetic/dynamic models. These library Models are fully documented in the User's Guide and many are illustrated in the numerous example runs contained in the User's Guide.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR001861-15
Application #
6205827
Study Section
Project Start
1999-09-01
Project End
2000-08-31
Budget Start
1998-10-01
Budget End
1999-09-30
Support Year
15
Fiscal Year
1999
Total Cost
Indirect Cost
Name
University of Southern California
Department
Type
DUNS #
041544081
City
Los Angeles
State
CA
Country
United States
Zip Code
90089
Song, Dong; Wang, Haonan; Tu, Catherine Y et al. (2013) Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions. J Comput Neurosci 35:335-57
Hoppenbrouwers, Toke; Oliveira, Flavia; Sandarupa, Stanislaus et al. (2012) The development of the circadian heart rate rhythm (CHR) in Asian infants. Early Hum Dev 88:555-61
Wang, Xiaoning; Schumitzky, Alan; D'Argenio, David Z (2007) Nonlinear Random Effects Mixture Models: Maximum Likelihood Estimation via the EM Algorithm. Comput Stat Data Anal 51:6614-6623
Gholmieh, Ghassan; Courellis, Spiros; Marmarelis, Vasilis et al. (2007) Nonlinear dynamic model of CA1 short-term plasticity using random impulse train stimulation. Ann Biomed Eng 35:847-57
Gholmieh, Ghassan; Courellis, Spiros; Dimoka, Angelika et al. (2004) An algorithm for real-time extraction of population EPSP and population spike amplitudes from hippocampal field potential recordings. J Neurosci Methods 136:111-21
Ashjian, Peter; Elbarbary, Amir; Zuk, Patricia et al. (2004) Noninvasive in situ evaluation of osteogenic differentiation by time-resolved laser-induced fluorescence spectroscopy. Tissue Eng 10:411-20
Blasi, Anna; Jo, Javier; Valladares, Edwin et al. (2003) Cardiovascular variability after arousal from sleep: time-varying spectral analysis. J Appl Physiol 95:1394-404
Jo, Javier A; Blasi, Anna; Valladares, Edwin et al. (2003) Model-based assessment of autonomic control in obstructive sleep apnea syndrome during sleep. Am J Respir Crit Care Med 167:128-36
Belozeroff, Vasily; Berry, Richard B; Khoo, Michael C K (2003) Model-based assessment of autonomic control in obstructive sleep apnea syndrome. Sleep 26:65-73
Bading, James R; Yoo, Paul B; Fissekis, John D et al. (2003) Kinetic modeling of 5-fluorouracil anabolism in colorectal adenocarcinoma: a positron emission tomography study in rats. Cancer Res 63:3667-74

Showing the most recent 10 out of 84 publications