This subproject is one of many research subprojects utilizing theresources provided by a Center grant funded by NIH/NCRR. The subproject andinvestigator (PI) may have received primary funding from another NIH source,and thus could be represented in other CRISP entries. The institution listed isfor the Center, which is not necessarily the institution for the investigator.Regeneration and protection of the cardiovascular system is essential for vertebrates. Blood clots (solid yet elastic clumps of blood cells mixed with fibrin proteins) form part of the emergency response to an injured blood vessel; they surround the damaged tissue stopping bleeding and blocking invasion by foreign pathogens. On the other hand, blood clots can restrict essential and normal blood flow if they form at the wrong place, or break free from a larger vessel only to later block a smaller one (thrombosis) [1]. Therefore, blood clots must be stiff enough to seal wounded vessels, yet flexible to prevent breakage and subsequent blockage of small vessels [2].Blood clots are built from red blood cells and a protein called fibrinogen. In its active form, fibrinogen is converted by thrombin into fibrin, which polymerizes into a branched network to form a hemostatic plug in combination with platelets and blood clotting factors [3,4]. The mechanical properties of blood clots are highly dependent on both the network architecture of fibrin and the mechanical properties of fibrin's individual components [4].Interactions between paired chains of fibrin and fibrinogen have been described by several recent studies that stretched these molecules using both optical tweezers [5, 6, 7] and atomic force microscopy (AFM)[8]. However, the elastic properties of single fibrinogen molecules and their coiled-coil helices, the predominant structures along the length of the molecule, remain unclear.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR005969-19
Application #
7723603
Study Section
Special Emphasis Panel (ZRG1-BCMB-E (40))
Project Start
2008-08-01
Project End
2009-07-31
Budget Start
2008-08-01
Budget End
2009-07-31
Support Year
19
Fiscal Year
2008
Total Cost
$63,156
Indirect Cost
Name
University of Illinois Urbana-Champaign
Department
Type
Organized Research Units
DUNS #
041544081
City
Champaign
State
IL
Country
United States
Zip Code
61820
Shim, Jiwook; Banerjee, Shouvik; Qiu, Hu et al. (2017) Detection of methylation on dsDNA using nanopores in a MoS2 membrane. Nanoscale 9:14836-14845
Wolfe, Aaron J; Si, Wei; Zhang, Zhengqi et al. (2017) Quantification of Membrane Protein-Detergent Complex Interactions. J Phys Chem B 121:10228-10241
Decker, Karl; Page, Martin; Aksimentiev, Aleksei (2017) Nanoscale Ion Pump Derived from a Biological Water Channel. J Phys Chem B 121:7899-7906
Radak, Brian K; Chipot, Christophe; Suh, Donghyuk et al. (2017) Constant-pH Molecular Dynamics Simulations for Large Biomolecular Systems. J Chem Theory Comput 13:5933-5944
Sun, Chang; Taguchi, Alexander T; Vermaas, Josh V et al. (2016) Q-Band Electron-Nuclear Double Resonance Reveals Out-of-Plane Hydrogen Bonds Stabilize an Anionic Ubisemiquinone in Cytochrome bo3 from Escherichia coli. Biochemistry 55:5714-5725
Belkin, Maxim; Aksimentiev, Aleksei (2016) Molecular Dynamics Simulation of DNA Capture and Transport in Heated Nanopores. ACS Appl Mater Interfaces 8:12599-608
Poudel, Kumud R; Dong, Yongming; Yu, Hang et al. (2016) A time course of orchestrated endophilin action in sensing, bending, and stabilizing curved membranes. Mol Biol Cell 27:2119-32
Vermaas, Josh V; Taguchi, Alexander T; Dikanov, Sergei A et al. (2015) Redox potential tuning through differential quinone binding in the photosynthetic reaction center of Rhodobacter sphaeroides. Biochemistry 54:2104-16
Belkin, Maxim; Chao, Shu-Han; Jonsson, Magnus P et al. (2015) Plasmonic Nanopores for Trapping, Controlling Displacement, and Sequencing of DNA. ACS Nano 9:10598-611
Shen, Rong; Han, Wei; Fiorin, Giacomo et al. (2015) Structural Refinement of Proteins by Restrained Molecular Dynamics Simulations with Non-interacting Molecular Fragments. PLoS Comput Biol 11:e1004368

Showing the most recent 10 out of 371 publications