This subproject is one of many research subprojects utilizing theresources provided by a Center grant funded by NIH/NCRR. The subproject andinvestigator (PI) may have received primary funding from another NIH source,and thus could be represented in other CRISP entries. The institution listed isfor the Center, which is not necessarily the institution for the investigator.Glycans may be considered to a first approximation as an acidic comound class. This is justified for animal glycans based on relatively high levels of capping of N- and O-glycans with sialic acids and by the prevalence of the sulfated glycosaminoglycan classes. It is becoming clear that mass spectrometric analysis of native glycans is best accomplished using negative ions. As part of the activity at the MSR, amide-silica HILIC and porous graphitized carbon have been used for native glycan separations. Commercial mass spectrometric interfaces have been optimized for analysis of biomolecules in the postive ion mode. The most common spray devices employ silica or stainless steel materials. Silica material does not produce adequate spray stability in the negative mode due to a variety of factors. Stainless steel may undergo electrochemical reactions during the negative ion electrospray process. The extent to which these problems occur depends on the commercial instrument being used. To date, negative ion LC/MS using the Bruker Esquire instrument has been very robust using a stainless steel sprayer. This instrument places electrical potential on the MS optics, leaving the sprayer at ground. Tests Agilent ion trap and QTOF instruments using the chip chromatographic interface have been very successful. The spray is stable and robust. The sprayer is at ground potential and the spray tip is made of polyimide. It has not been possible to achieve stable spray using a Qstar instrument using a silica sprayer. This instrument places the electrical potential on the spray tip. It appears that this configuration accentuates the extent to which electrochemical reactions result in clogging of the tip. In ongoing work, the utility of stainless, platinum, and polyimide tips will be compared for the Qstar and Orbitrap instruments at the MSR. The goal is to achieve robust performance in the negative mode for these instruments.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biotechnology Resource Grants (P41)
Project #
5P41RR010888-12
Application #
7723073
Study Section
Special Emphasis Panel (ZRG1-BCMB-H (40))
Project Start
2008-06-01
Project End
2009-05-31
Budget Start
2008-06-01
Budget End
2009-05-31
Support Year
12
Fiscal Year
2008
Total Cost
$5,187
Indirect Cost
Name
Boston University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
604483045
City
Boston
State
MA
Country
United States
Zip Code
02118
Lu, Yanyan; Jiang, Yan; Prokaeva, Tatiana et al. (2017) Oxidative Post-Translational Modifications of an Amyloidogenic Immunoglobulin Light Chain Protein. Int J Mass Spectrom 416:71-79
Sethi, Manveen K; Zaia, Joseph (2017) Extracellular matrix proteomics in schizophrenia and Alzheimer's disease. Anal Bioanal Chem 409:379-394
Hu, Han; Khatri, Kshitij; Zaia, Joseph (2017) Algorithms and design strategies towards automated glycoproteomics analysis. Mass Spectrom Rev 36:475-498
Ji, Yuhuan; Bachschmid, Markus M; Costello, Catherine E et al. (2016) S- to N-Palmitoyl Transfer During Proteomic Sample Preparation. J Am Soc Mass Spectrom 27:677-85
Hu, Han; Khatri, Kshitij; Klein, Joshua et al. (2016) A review of methods for interpretation of glycopeptide tandem mass spectral data. Glycoconj J 33:285-96
Pu, Yi; Ridgeway, Mark E; Glaskin, Rebecca S et al. (2016) Separation and Identification of Isomeric Glycans by Selected Accumulation-Trapped Ion Mobility Spectrometry-Electron Activated Dissociation Tandem Mass Spectrometry. Anal Chem 88:3440-3
Wang, Yun Hwa Walter; Meyer, Rosana D; Bondzie, Philip A et al. (2016) IGPR-1 Is Required for Endothelial Cell-Cell Adhesion and Barrier Function. J Mol Biol 428:5019-5033
Srinivasan, Srimathi; Chitalia, Vipul; Meyer, Rosana D et al. (2015) Hypoxia-induced expression of phosducin-like 3 regulates expression of VEGFR-2 and promotes angiogenesis. Angiogenesis 18:449-62
Yu, Xiang; Sargaeva, Nadezda P; Thompson, Christopher J et al. (2015) In-Source Decay Characterization of Isoaspartate and ?-Peptides. Int J Mass Spectrom 390:101-109
Steinhorn, Benjamin S; Loscalzo, Joseph; Michel, Thomas (2015) Nitroglycerin and Nitric Oxide--A Rondo of Themes in Cardiovascular Therapeutics. N Engl J Med 373:277-80

Showing the most recent 10 out of 253 publications