P3. Abstract The mature HIV-1 capsid is an ordered protein shell that houses the viral genome and other viral or host factors necessary for infection of a target cell. Its structure and stability are critical to infection?it must stay at least partially assembled until it reaches the nuclear periphery, and a variety of host factors, either beneficial or inhibitory to the virus, recognize specific capsid patterns only present in assembled cores. Potentially hundreds of host factors bind the HIV-1 capsid, but our knowledge of host factor-capsid interactions at the molecular level has been limited, in part caused by a lack of soluble capsid constructs that recapitulate lattice interfaces in the assembled state and by challenges in purifying recombinant capsid-binding host factors. To overcome these obstacles, we propose to design and build a repertoire of soluble capsid assemblies that represent all unique capsid-lattice interfaces. This will be achieved by making use of previously published intra-hexamer engineered disulfides and by incorporating the SpyCatcher/SpyTag system to create stable isopeptide bonds between hexamers. With these new capsid assemblies in hand, we will use well-established biophysical and biochemical techniques to map binding modes and determine high-resolution structures of these capsid assemblies in complex with a range of host factors including TRIM5?, TRIMCyp, MxB, Fez1, and CypA, most of which we have optimized for expression and purification. The proposed work will allow us to overcome major experimental hurdles to advance mechanistic understandings of the capsid-related key steps of the HIV life cycle.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center (P50)
Project #
2P50GM082251-11
Application #
9407941
Study Section
Special Emphasis Panel (ZRG1)
Project Start
Project End
Budget Start
2017-08-10
Budget End
2018-07-31
Support Year
11
Fiscal Year
2017
Total Cost
Indirect Cost
Name
University of Pittsburgh
Department
Type
DUNS #
004514360
City
Pittsburgh
State
PA
Country
United States
Zip Code
15213
Himes, Benjamin A; Zhang, Peijun (2018) emClarity: software for high-resolution cryo-electron tomography and subtomogram averaging. Nat Methods 15:955-961
Balasubramaniam, Muthukumar; Zhou, Jing; Addai, Amma et al. (2018) PF74 Inhibits HIV-1 Integration by Altering The Composition of the Preintegration Complex. J Virol :
Lu, Manman; Sarkar, Sucharita; Wang, Mingzhang et al. (2018) 19F Magic Angle Spinning NMR Spectroscopy and Density Functional Theory Calculations of Fluorosubstituted Tryptophans: Integrating Experiment and Theory for Accurate Determination of Chemical Shift Tensors. J Phys Chem B 122:6148-6155
Kraus, Jodi; Gupta, Rupal; Yehl, Jenna et al. (2018) Chemical Shifts of the Carbohydrate Binding Domain of Galectin-3 from Magic Angle Spinning NMR and Hybrid Quantum Mechanics/Molecular Mechanics Calculations. J Phys Chem B 122:2931-2939
Quinn, Caitlin M; Wang, Mingzhang; Polenova, Tatyana (2018) NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology. Methods Mol Biol 1688:1-35
Hadden, Jodi A; Perilla, Juan R (2018) All-atom virus simulations. Curr Opin Virol 31:82-91
Yan, Junpeng; Shun, Ming-Chieh; Hao, Caili et al. (2018) HIV-1 Vpr Reprograms CLR4DCAF1 E3 Ubiquitin Ligase to Antagonize Exonuclease 1-Mediated Restriction of HIV-1 Infection. MBio 9:
Dick, Robert A; Zadrozny, Kaneil K; Xu, Chaoyi et al. (2018) Inositol phosphates are assembly co-factors for HIV-1. Nature 560:509-512
Martin, Jessica L; Mendonça, Luiza M; Marusinec, Rachel et al. (2018) Critical Role of the Human T-Cell Leukemia Virus Type 1 Capsid N-Terminal Domain for Gag-Gag Interactions and Virus Particle Assembly. J Virol 92:
Wang, Mingzhang; Lu, Manman; Fritz, Matthew P et al. (2018) Fast Magic-Angle Spinning 19 F?NMR Spectroscopy of HIV-1 Capsid Protein Assemblies. Angew Chem Int Ed Engl 57:16375-16379

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