Abstract

BlONINFORMATICS CORE AND HUB OF INNOVATION Mission The Bioinformatics Core Facility will provide scientific, technical and administrative support for the computational needs of META CSB research. The Bioinformatics Core Facility will provide expertise in mathematical and statistical methods and in software applications, will help individual users and lab groups to configure and launch virtual machines in a cloud computing environment, and will help train the next generation of bioinformaticians.

  Funding Agency

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center (P50)
Project #
5P50GM098911-02
Application #
8546421
Study Section
Special Emphasis Panel (ZGM1-CBCB-3)
Project Start
Project End
Budget Start
2013-09-01
Budget End
2014-08-31
Support Year
2
Fiscal Year
2013
Total Cost
$231,433
Indirect Cost
$71,824

  Institution

Name
University of Oregon
Department
Type
DUNS #
948117312
City
Eugene
State
OR
Country
United States
Zip Code
97403

  Publications

Massaquoi, Michelle S; Guillemin, Karen (2018) Evolving in a Microbial Soup: You Are What They Eat. Dev Cell 47:682-683
Logan, Savannah L; Dudley, Christopher; Baker, Ryan P et al. (2018) Automated high-throughput light-sheet fluorescence microscopy of larval zebrafish. PLoS One 13:e0198705
Fahimipour, Ashkaan K; Hartmann, Erica M; Siemens, Andrew et al. (2018) Daylight exposure modulates bacterial communities associated with household dust. Microbiome 6:175
Parthasarathy, Raghuveer (2018) Monitoring microbial communities using light sheet fluorescence microscopy. Curr Opin Microbiol 43:31-37
Hay, Edouard A; Parthasarathy, Raghuveer (2018) Performance of convolutional neural networks for identification of bacteria in 3D microscopy datasets. PLoS Comput Biol 14:e1006628
Stagaman, Keaton; Cepon-Robins, Tara J; Liebert, Melissa A et al. (2018) Market Integration Predicts Human Gut Microbiome Attributes across a Gradient of Economic Development. mSystems 3:
Troll, Joshua V; Hamilton, M Kristina; Abel, Melissa L et al. (2018) Microbiota promote secretory cell determination in the intestinal epithelium by modulating host Notch signaling. Development 145:
Robinson, Catherine D; Klein, Helena S; Murphy, Kyleah D et al. (2018) Experimental bacterial adaptation to the zebrafish gut reveals a primary role for immigration. PLoS Biol 16:e2006893
Miller, Elizabeth Theresa; Svanbäck, Richard; Bohannan, Brendan J M (2018) Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology. Trends Ecol Evol 33:926-935
Burns, A R; Watral, V; Sichel, S et al. (2018) Transmission of a common intestinal neoplasm in zebrafish by cohabitation. J Fish Dis 41:569-579

Showing the most recent 10 out of 46 publications