Our overarching goal is to develop minimally invasive approaches to better predict outcome and novel mechanisms in alcoholic hepatitis (AH). AH is characterized by acute hepatic decompensation and multiple organ failure. Although supportive care for AH has improved, short-term mortality has largely remained unchanged (30-40%) for decades. Effective approaches to predict risk hamper the treatment of AH. The hepatic extracellular matrix (ECM) responds dynamically to organ injury and ECM turnover increases; we propose to take advantage of this to develop new biomarkers for AH. The peptidome, low molecular weight peptides in biologic fluids, includes not only synthesized peptides, but fragments of degraded proteins (i.e., ?degradome?). We hypothesize that the ECM degradome in plasma will yield new biomarkers to predict outcome and mechanisms in AH. We will test this hypothesis via the following Specific Aims: 1). To identify key changes in the peptidome as predictive biomarkers of outcome in AH. Unbiased peptidomics and multivariate analyses will identify degradomic features independently linked to prognosis. Protease activity that could produce significantly changed peptides will be predicted using Proteasix. We will also determine the mechanistic role of ECM turnover in the in parallel established models of alcohol-induced liver injury. 2) To develop probabilistic graphical models to predict outcome in AH. Whereas we expect the results of Aim 1 to establish that the peptidome profile in patients correlates with overall outcome, biomarkers alone are often insufficient to accurately predict individual patient outcome. We will therefore employ machine learning methods like probabilistic graphical models (PGMs) over mixed data types to integrate peptidomic and individual patient clinical data, into a single probabilistic graphical framework. The resulting graphs will then be used to infer causal interactions between variables, select informative biomarkers that will more specifically predict the outcome, and gain new mechanistic insight into the biology of AH (hypothesis generation). 3) To validate the use of the peptidome as a predictive tool for determining outcome in AH. Using a large prospectively-designed patient cohort with established outcomes, we will test the ability of the algorithms and biomarkers generated in this study to predict outcome. The successful completion of the proposed work will produce significant results at various levels: (1) Biomarker discovery: we will identify biomarkers and conditional biomarkers for AH prognosis. (2) Mechanistic understanding of AH: our models will generate hypotheses about the interactions between variables at different scales (molecular, individual) that will provide insights on the proteins that are involved in AH. (3) Algorithm development: through this project we will extend our mixed data graph learning algorithms to include censored variables (i.e., survival data). As a result of the above, this project is likely to yield novel diagnostic tools for AH that may also translate to other liver diseases.
Alcoholic hepatitis (AH) is a severe acute form of alcoholic liver disease with a very high mortality rate. Despite years of research, the standard-of-care and mortality rate has not changed dramatically in over 50 years. Our goal is to develop new computational and experimental methods and discover new biomarkers for AH outcome that can efficiently identify at-risk individuals. A second goal of the project is to identify molecular mechanisms of AH, which could be targeted therapeutically.
